Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039282 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 5.6e-33 143.7 71 100.0
Glyma.14G017500 Glycine max HOM05D001534 ORTHO05D004495 6.4e-29 130.2 71 85.9
Manes.03G135400 Manihot esculenta HOM05D001534 ORTHO05D004495 6.4e-29 130.2 71 90.1
PGR083G1538 Punica granatum HOM05D001534 ORTHO05D004495 6.4e-29 130.2 71 90.1
RcHm_v2.0_Chr5g0041721 Rosa chinensis HOM05D001534 ORTHO05D004495 8.3e-29 129.8 71 88.7
Duzib213G1078 Durio zibethinus HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 88.7
FvH4_3g23660 Fragaria vesca HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 87.3
FAN11G0198 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 87.3
FAN16G1322 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 87.3
FAN21G0845 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 87.3
FAN25G0400 Fragaria x ananassa HOM05D001534 ORTHO05D004495 1.9e-28 128.6 71 87.3
MD03G1192100 Malus domestica HOM05D001534 ORTHO05D004495 2.4e-28 128.3 71 85.9
Cpa.g.sc12.231 Carica papaya HOM05D001534 ORTHO05D004495 4.1e-28 127.5 71 87.3
CiPaw.11G195700 Carya illinoinensis HOM05D001534 ORTHO05D004495 5.4e-28 127.1 71 85.9
MD11G1208300 Malus domestica HOM05D001534 ORTHO05D004495 5.4e-28 127.1 71 85.9
Sc03g0008250 Simmondsia chinensis HOM05D001534 ORTHO05D004495 5.4e-28 127.1 71 84.5
Glyma.08G322900 Glycine max HOM05D001534 ORTHO05D004495 7.0e-28 126.7 71 85.9
Lalb_Chr18g0050341 Lupinus albus HOM05D001534 ORTHO05D004495 7.0e-28 126.7 71 83.1
Phvul.006G049200 Phaseolus vulgaris HOM05D001534 ORTHO05D004495 7.0e-28 126.7 71 84.5
COL.COLO4_09746 Corchorus olitorius HOM05D001534 ORTHO05D003503 9.2e-28 126.3 71 85.9
Duzib268G1739 Durio zibethinus HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 85.9
Gohir.A08G024400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 87.3
Gohir.A13G136100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 87.3
Gohir.D08G034900 Gossypium hirsutum HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 87.3
Gohir.D13G140400 Gossypium hirsutum HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 87.3
Gorai.004G032800 Gossypium raimondii HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 87.3
Gorai.013G157000 Gossypium raimondii HOM05D001534 ORTHO05D004495 9.2e-28 126.3 71 87.3
Glyma.02G295900 Glycine max HOM05D001534 ORTHO05D004495 1.2e-27 125.9 71 83.1
Prupe.4G225100 Prunus persica HOM05D001534 ORTHO05D004495 1.2e-27 125.9 71 84.5
TWI38G0624 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 1.2e-27 125.9 71 84.5
HanXRQChr03g0076901 Helianthus annuus HOM05D001534 ORTHO05D004495 1.6e-27 125.6 71 87.3
Nitab4.5_0006248g0040 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.6e-27 125.6 71 84.5
CiPaw.12G134400 Carya illinoinensis HOM05D001534 ORTHO05D004495 2.0e-27 125.2 71 85.9
DCAR_002221 Daucus carota HOM05D001534 ORTHO05D004495 2.0e-27 125.2 71 84.5
Duzib170G0444 Durio zibethinus HOM05D001534 ORTHO05D004495 2.0e-27 125.2 71 85.9
Glyma.18G089300 Glycine max HOM05D001534 ORTHO05D004495 2.0e-27 125.2 71 84.5
Gohir.D05G375100 Gossypium hirsutum HOM05D001534 ORTHO05D004495 2.0e-27 125.2 71 87.3
Potri.011G092600 Populus trichocarpa HOM05D001534 ORTHO05D004495 2.0e-27 125.2 71 84.5
Thecc.07G150700 Theobroma cacao HOM05D001534 ORTHO05D004495 2.0e-27 125.2 71 84.5
HanXRQChr15g0463351 Helianthus annuus HOM05D001534 ORTHO05D004495 2.7e-27 124.8 71 84.5
Lj6g0025719 Lotus japonicus HOM05D001534 ORTHO05D004495 2.7e-27 124.8 71 84.5
TWI38G1361 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 2.7e-27 124.8 71 84.5
DCAR_022596 Daucus carota HOM05D001534 ORTHO05D004495 3.5e-27 124.4 71 85.9
ECA246G1860 Erigeron canadensis HOM05D001534 ORTHO05D004495 3.5e-27 124.4 71 83.1
Potri.001G359600 Populus trichocarpa HOM05D001534 ORTHO05D004495 4.6e-27 124.0 71 84.5
TAR627G0748 Trochodendron aralioides HOM05D001534 ORTHO05D004495 4.6e-27 124.0 71 84.5
vmacro11580 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.6e-27 124.0 71 83.1
vmacro22992 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 4.6e-27 124.0 71 83.1
Actinidia00113 Actinidia chinensis HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
CAN.G290.7 Capsicum annuum HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
Manes.15G065300 Manihot esculenta HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
Nitab4.5_0000130g0260 Nicotiana tabacum HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
Solyc07g049710.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
Sopen07g025310 Solanum pennellii HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
PGSC0003DMG400001082 Solanum tuberosum HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 83.1
TWI39G1192 Tripterygium wilfordii HOM05D001534 ORTHO05D004495 6.0e-27 123.6 71 84.5
Eucgr.F00645 Eucalyptus grandis HOM05D001534 ORTHO05D004495 7.8e-27 123.2 71 83.1
Gohir.A04G011500 Gossypium hirsutum HOM05D001534 ORTHO05D004495 1.0e-26 122.9 71 85.9
Gorai.009G444000 Gossypium raimondii HOM05D001534 ORTHO05D004495 1.0e-26 122.9 71 85.9
Nitab4.5_0006519g0060 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.0e-26 122.9 71 81.7
EL10Ac9g20750 Beta vulgaris HOM05D001534 ORTHO05D004495 1.3e-26 122.5 71 83.1
HanXRQChr05g0159691 Helianthus annuus HOM05D001534 ORTHO05D004495 1.3e-26 122.5 71 80.3
Lsat_1_v5_gn_9_90821 Lactuca sativa HOM05D001534 ORTHO05D004495 1.3e-26 122.5 71 84.5
Medtr5g094130 Medicago truncatula HOM05D001534 ORTHO05D004495 2.3e-26 121.7 71 81.7
Peaxi162Scf00007g00125 Petunia axillaris HOM05D001534 ORTHO05D004495 2.3e-26 121.7 71 80.3
Solyc12g098720.3 Solanum lycopersicum HOM05D001534 ORTHO05D004495 2.3e-26 121.7 71 80.3
Sopen12g033480 Solanum pennellii HOM05D001534 ORTHO05D004495 2.3e-26 121.7 71 80.3
AL7G26120 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 3.0e-26 121.3 71 81.7
arahy.Tifrunner.gnm1.ann1.DAYY2D Arachis hypogaea HOM05D001534 ORTHO05D004495 3.0e-26 121.3 71 78.9
GSVIVG01037739001 Vitis vinifera HOM05D001534 ORTHO05D004495 3.0e-26 121.3 71 83.1
Thhalv10026732m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 3.9e-26 120.9 71 81.7
Sp6g17210 Schrenkiella parvula HOM05D001534 ORTHO05D004495 3.9e-26 120.9 71 80.3
THA.LOC104817690 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 3.9e-26 120.9 71 81.7
THA.LOC104811636 Tarenaya hassleriana HOM05D001534 ORTHO05D004495 5.0e-26 120.6 71 81.7
Migut.H01785 Erythranthe guttata HOM05D001534 ORTHO05D004495 6.6e-26 120.2 71 77.5
Migut.M01699 Erythranthe guttata HOM05D001534 ORTHO05D004495 6.6e-26 120.2 71 78.9
LjContig00272g0021661 Lotus japonicus HOM05D001534 ORTHO05D004495 8.6e-26 119.8 71 78.9
AT4G26710 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 1.1e-25 119.4 71 80.3
A03p14150 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-25 119.4 71 80.3
BraA03t10716Z Brassica rapa HOM05D001534 ORTHO05D004495 1.1e-25 119.4 71 80.3
Carub.0007s1413 Capsella rubella HOM05D001534 ORTHO05D004495 1.1e-25 119.4 71 80.3
CARHR234330 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.1e-25 119.4 71 78.9
Cc05_g14430 Coffea canephora HOM05D001534 ORTHO05D004495 1.1e-25 119.4 68 83.8
CSS0049003 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.5e-25 119.0 67 86.6
CSS0050069 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 1.5e-25 119.0 67 86.6
Haze_09755 Corylus avellana HOM05D001534 ORTHO05D004495 1.9e-25 118.6 71 83.1
Nn2g12773 Nelumbo nucifera HOM05D001534 ORTHO05D004495 1.9e-25 118.6 71 81.7
SGA_v2.0_scaffold168G38510 Striga asiatica HOM05D001534 ORTHO05D004495 2.5e-25 118.2 68 83.8
AT5G55290 Arabidopsis thaliana HOM05D001534 ORTHO05D004495 3.3e-25 117.9 71 78.9
Carub.0008s1562 Capsella rubella HOM05D001534 ORTHO05D004495 3.3e-25 117.9 71 78.9
Ciclev10010112m.g Citrus clementina HOM05D001534 ORTHO05D004495 3.3e-25 117.9 71 81.7
SalBow8G1454 Salvia bowleyana HOM05D001534 ORTHO05D004495 3.3e-25 117.9 71 81.7
Thhalv10015209m.g Eutrema salsugineum HOM05D001534 ORTHO05D004495 4.3e-25 117.5 71 78.9
AL8G30834 Arabidopsis lyrata HOM05D001534 ORTHO05D004495 7.3e-25 116.7 71 77.5
MSTRG.13004 Avicennia marina HOM05D001534 ORTHO05D004495 7.3e-25 116.7 71 77.5
A02p09760 Brassica napus HOM05D001534 ORTHO05D004495 9.5e-25 116.3 71 77.5
BraA02t06040Z Brassica rapa HOM05D001534 ORTHO05D004495 9.5e-25 116.3 71 77.5
Sp7g24710 Schrenkiella parvula HOM05D001534 ORTHO05D004495 9.5e-25 116.3 71 78.9
TPR.G39481 Trifolium pratense HOM05D001534 ORTHO05D004495 9.5e-25 116.3 67 82.1
CAN.G710.54 Capsicum annuum HOM05D001534 ORTHO05D004495 1.2e-24 115.9 71 80.3
CARHR268660 Cardamine hirsuta HOM05D001534 ORTHO05D004495 1.2e-24 115.9 71 77.5
Hma1.2p1_0036F.1_g023010 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 1.6e-24 115.5 73 79.5
Solyc09g098440.4 Solanum lycopersicum HOM05D001534 ORTHO05D004495 1.6e-24 115.5 71 78.9
Sopen09g036370 Solanum pennellii HOM05D001534 ORTHO05D004495 1.6e-24 115.5 71 78.9
PGSC0003DMG400021620 Solanum tuberosum HOM05D001534 ORTHO05D004495 1.6e-24 115.5 71 78.9
BcaB05g22197 Brassica carinata HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 76.1
BcaC03g14248 Brassica carinata HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 76.1
C02p16290 Brassica napus HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 76.1
BolC2t07730H Brassica oleracea HOM05D001534 ORTHO05D004495 2.1e-24 115.2 71 76.1
C01p22800 Brassica napus HOM05D001534 ORTHO05D004495 2.8e-24 114.8 71 77.5
BolC1t02210H Brassica oleracea HOM05D001534 ORTHO05D004495 2.8e-24 114.8 71 77.5
Eucgr.F03511 Eucalyptus grandis HOM05D001534 ORTHO05D004495 2.8e-24 114.8 71 78.9
C07p55180 Brassica napus HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 77.5
BolC7t45994H Brassica oleracea HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 77.5
BraA03t14757Z Brassica rapa HOM05D001534 ORTHO05D004495 4.7e-24 114.0 71 77.5
PSO302G0069 Papaver somniferum HOM05D001534 ORTHO05D004495 4.7e-24 114.0 68 79.4
PSO210G6816 Papaver somniferum HOM05D001534 ORTHO05D004495 6.2e-24 113.6 68 77.9
ClCG09G011120 Citrullus lanatus HOM05D001534 ORTHO05D004495 8.0e-24 113.2 71 76.1
MELO3C013122.2 Cucumis melo HOM05D001534 ORTHO05D004495 8.0e-24 113.2 71 76.1
SEGI_41454 Sequoiadendron giganteum HOM05D001534 ORTHO05D004495 8.0e-24 113.2 71 76.1
BcaC07g38243 Brassica carinata HOM05D001534 ORTHO05D004495 1.1e-23 112.8 71 76.1
A08p20740 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-23 112.8 71 76.1
C08p09920 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-23 112.8 71 76.1
BolC8t48669H Brassica oleracea HOM05D001534 ORTHO05D004495 1.1e-23 112.8 71 76.1
BraA08t34028Z Brassica rapa HOM05D001534 ORTHO05D004495 1.1e-23 112.8 71 76.1
CANSAT35G0060 Cannabis sativa HOM05D001534 ORTHO05D004495 1.1e-23 112.8 71 76.1
Nitab4.5_0002313g0070 Nicotiana tabacum HOM05D001534 ORTHO05D004495 1.4e-23 112.5 71 76.1
RcHm_v2.0_Chr5g0001541 Rosa chinensis HOM05D001534 ORTHO05D004495 1.4e-23 112.5 71 77.5
TPR.G30643 Trifolium pratense HOM05D001534 ORTHO05D004495 2.3e-23 111.7 67 82.1
CDE05G1212 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 3.1e-23 111.3 71 76.1
FvH4_3g01010 Fragaria vesca HOM05D001534 ORTHO05D004495 3.1e-23 111.3 71 76.1
PGR031G2647 Punica granatum HOM05D001534 ORTHO05D004495 3.1e-23 111.3 71 74.6
Sed0022155 Sechium edule HOM05D001534 ORTHO05D004495 3.1e-23 111.3 71 74.6
GSVIVG01003348001 Vitis vinifera HOM05D001534 ORTHO05D004495 3.1e-23 111.3 71 76.1
MD10G1331400 Malus domestica HOM05D001534 ORTHO05D004495 4.0e-23 110.9 71 77.5
Prupe.4G010800 Prunus persica HOM05D001534 ORTHO05D004495 4.0e-23 110.9 71 77.5
FAN21G0767 Fragaria x ananassa HOM05D001534 ORTHO05D004495 5.2e-23 110.5 70 75.7
CDE11G0835 Ceratophyllum demersum HOM05D001534 ORTHO05D004495 6.8e-23 110.2 71 73.2
Lsat_1_v5_gn_5_2821 Lactuca sativa HOM05D001534 ORTHO05D004495 6.8e-23 110.2 98 59.2
CSS0048655 Camellia sinensis var. sinensis HOM05D001534 ORTHO05D004495 8.9e-23 109.8 67 82.1
MBI17_g17518_MAGBIO Magnolia biondii HOM05D001534 ORTHO05D004495 1.2e-22 109.4 71 71.8
Sed0022495 Sechium edule HOM05D001534 ORTHO05D004495 1.2e-22 109.4 71 73.2
MD05G1357400 Malus domestica HOM05D001534 ORTHO05D004495 1.5e-22 109.0 71 76.1
TPR.G18335 Trifolium pratense HOM05D001534 ORTHO05D004495 1.5e-22 109.0 67 77.6
GSVIVG01003343001 Vitis vinifera HOM05D001534 ORTHO05D004495 1.5e-22 109.0 71 74.6
BcaC06g32730 Brassica carinata HOM05D001534 ORTHO05D004495 2.6e-22 108.2 71 73.2
Os04g0660600 Oryza sativa ssp. japonica HOM05D001534 ORTHO05D004495 1.3e-21 105.9 67 76.1
CANSAT78G2243 Cannabis sativa HOM05D001534 ORTHO05D004495 1.9e-20 102.1 73 68.5
Zm00001eb269510 Zea mays HOM05D001534 ORTHO05D004495 1.0e-18 96.3 67 71.6
Lsat_1_v5_gn_9_36141 Lactuca sativa HOM05D001534 ORTHO05D004495 5.1e-18 94.0 53 83.0
Pp3c11_2840 Physcomitrium patens HOM05D001534 ORTHO05D004495 1.9e-17 92.0 72 59.7
SMO197G0080 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 2.5e-17 91.7 72 59.7
Pp3c1_1320 Physcomitrium patens HOM05D001534 ORTHO05D004495 3.6e-16 87.8 72 58.3
Psat5g174000 Pisum sativum HOM05D001534 ORTHO05D004495 4.7e-16 87.4 49 79.6
SMO139G0082 Selaginella moellendorffii HOM05D001534 ORTHO05D004495 5.2e-15 84.0 71 59.2
Oeu007990.1 Olea europaea HOM05D001534 ORTHO05D004495 8.9e-15 83.2 49 77.6
Oeu019637.1 Olea europaea HOM05D001534 ORTHO05D004495 8.9e-15 83.2 49 79.6
Actinidia35374 Actinidia chinensis HOM05D001534 ORTHO05D004495 5.8e-14 80.5 49 75.5
CBR_g41757 Chara braunii HOM05D001534 ORTHO05D004495 5.8e-14 80.5 72 52.8
Hma1.2p1_3177F.1_g333625 Hydrangea macrophylla HOM05D001534 ORTHO05D004495 7.5e-14 80.1 49 75.5
Rhsim06G0224400 Rhododendron simsii HOM05D002795 ORTHO05D003219 1.7e-13 79.0 67 62.7
Nn5g26968 Nelumbo nucifera HOM05D001534 ORTHO05D004495 2.2e-13 78.6 71 62.0
A03p56890 Brassica napus HOM05D001534 ORTHO05D004495 1.1e-12 76.3 49 71.4
CsaV3_1G040420 Cucumis sativus L. HOM05D001534 ORTHO05D004495 2.4e-12 75.1 38 86.8
arahy.Tifrunner.gnm1.ann1.UV2YJP Arachis hypogaea HOM05D001534 ORTHO05D004495 1.2e-11 72.8 68 55.9
A01p17980 Brassica napus HOM05D001534 ORTHO05D004495 2.1e-11 72.0 40 85.0
BraA01t01753Z Brassica rapa HOM05D001534 ORTHO05D004495 2.1e-11 72.0 40 85.0
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 4.6e-11 70.9 37 89.2
FAN25G3175 Fragaria x ananassa HOM05D001534 ORTHO05D004495 4.6e-11 70.9 58 60.3
Mapoly0058s0087 Marchantia polymorpha HOM05D001534 ORTHO05D004495 6.0e-11 70.5 71 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1120 Anthoceros agrestis HOM05D001534 ORTHO05D004495 2.8e-08 61.6 72 47.2
SGA_v2.0_scaffold478G52224 Striga asiatica HOM05D001534 ORTHO05D004495 8.9e-07 56.6 34 76.5
Mapoly0008s0011 Marchantia polymorpha HOM05D001534 ORTHO05D004495 3.4e-06 54.7 65 40.0
vmacro09683 Vaccinium macrocarpon HOM05D001534 ORTHO05D004495 5.8e-06 53.9 37 67.6
Sabra16G0237300 Salix brachista HOM05D001534 ORTHO05D004495 7.6e-06 53.5 34 67.6
MCO11G509 Micromonas commoda HOM05D001534 ORTHO05D004495 9.9e-06 53.1 69 44.9


User provided reference genes

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