Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.4e-100 367.9 213 100.0
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.6e-97 357.1 212 97.2
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.8e-96 355.5 212 96.7
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.5e-86 323.2 212 88.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 2.0e-86 322.8 197 87.3
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.6e-86 322.4 212 86.8
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.2e-85 319.3 197 86.8
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 5.7e-81 304.7 219 76.3
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 5.0e-77 291.6 212 73.6
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.6e-75 286.6 212 74.1
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 2.3e-74 282.7 212 75.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.1e-74 281.6 213 70.9
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 8.7e-74 280.8 190 76.3
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 1.5e-73 280.0 213 70.9
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.9e-73 279.6 212 70.3
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.5e-73 279.3 195 74.4
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.6e-72 276.6 213 69.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.6e-72 276.6 212 68.9
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.6e-72 276.6 212 68.9
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.2e-72 276.2 214 69.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 2.8e-72 275.8 199 72.4
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 3.7e-72 275.4 197 71.6
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.7e-72 275.4 214 69.2
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.7e-72 275.4 198 74.2
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 6.3e-72 274.6 190 74.2
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 8.2e-72 274.2 212 68.9
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.1e-71 271.9 212 68.4
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.2e-70 270.4 212 67.9
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.5e-70 270.0 195 73.3
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.5e-70 270.0 190 71.6
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.6e-70 269.2 195 74.4
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 3.4e-70 268.9 213 69.5
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.0e-69 267.3 190 73.7
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.3e-69 266.9 199 70.9
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.3e-69 266.9 225 65.3
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 2.2e-69 266.2 212 67.5
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 8.5e-69 264.2 212 65.1
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 3.2e-68 262.3 190 71.1
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 4.2e-68 261.9 197 71.6
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 7.2e-68 261.2 197 71.1
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.2e-67 260.4 194 68.6
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.6e-67 260.0 197 70.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.1e-67 259.6 208 67.3
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.0e-66 257.3 190 73.2
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.0e-66 257.3 190 70.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.8e-66 256.5 212 64.6
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 3.9e-66 255.4 212 70.8
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 5.1e-66 255.0 212 64.6
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.1e-66 255.0 212 64.6
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 8.8e-66 254.2 197 65.5
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.5e-65 253.4 190 67.9
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.0e-65 253.1 212 64.2
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.3e-65 252.3 197 68.5
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 4.3e-65 251.9 212 64.2
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 5.7e-65 251.5 195 66.7
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.7e-64 250.0 190 69.5
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.2e-64 249.6 195 66.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.8e-64 249.2 196 67.3
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 2.8e-64 249.2 212 64.6
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.7e-64 248.8 196 67.3
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 3.7e-64 248.8 197 65.0
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 3.7e-64 248.8 197 65.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.7e-64 248.8 212 62.3
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.1e-63 247.3 190 68.9
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.1e-63 247.3 194 66.0
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 6.9e-63 244.6 197 64.0
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 9.1e-63 244.2 197 65.5
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 9.1e-63 244.2 197 63.5
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 9.1e-63 244.2 197 63.5
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 9.1e-63 244.2 197 63.5
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 9.1e-63 244.2 225 61.3
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.5e-62 243.4 212 60.8
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 2.0e-62 243.0 197 63.5
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 2.6e-62 242.7 214 61.2
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 4.5e-62 241.9 195 65.1
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.0e-61 240.7 195 66.7
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.7e-61 240.0 196 63.3
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.2e-61 239.6 195 63.1
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 2.9e-61 239.2 196 63.8
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 3.8e-61 238.8 212 59.9
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 3.8e-61 238.8 197 61.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.1e-60 237.3 195 65.1
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.9e-60 236.5 213 61.0
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 2.5e-60 236.1 201 61.2
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 4.2e-60 235.3 197 63.5
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 5.5e-60 235.0 206 60.7
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 5.5e-60 235.0 190 64.7
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.7e-59 232.6 196 62.2
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 3.6e-59 232.3 200 61.0
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 6.1e-59 231.5 189 66.7
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 7.9e-59 231.1 198 61.1
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.0e-58 230.7 190 65.3
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.0e-58 230.7 213 61.0
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.0e-58 230.7 168 71.4
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.3e-58 229.6 190 63.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.0e-58 229.2 190 64.7
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.0e-58 229.2 190 64.7
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.9e-58 228.8 198 64.1
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 3.9e-58 228.8 197 61.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.9e-58 228.8 189 65.6
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.8e-58 227.6 190 64.2
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 8.8e-58 227.6 213 60.6
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 9.7e-57 224.2 226 56.2
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 9.7e-57 224.2 190 63.7
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.3e-56 223.8 255 52.9
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-56 223.0 212 59.0
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.8e-55 219.9 206 59.7
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 2.0e-54 216.5 191 62.3
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.7e-53 213.4 214 57.0
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 6.5e-53 211.5 180 63.3
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 8.5e-53 211.1 196 57.7
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.1e-52 210.7 221 57.9
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.0e-50 202.6 180 60.6
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.8e-50 201.1 216 52.8
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.5e-49 200.3 201 55.7
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 5.3e-47 191.8 196 54.1
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.5e-41 171.4 212 50.0
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 3.7e-40 169.1 117 75.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.8e-39 166.8 175 57.7
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 5.4e-39 165.2 148 63.5
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.5e-38 162.5 216 46.8
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 5.9e-38 161.8 195 43.1
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.2e-33 147.5 113 69.9
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 4.4e-33 145.6 193 45.6
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 8.3e-32 141.4 193 45.1
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 4.1e-31 139.0 93 78.5
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 5.4e-31 138.7 92 78.3
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 5.4e-31 138.7 92 78.3
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 7.0e-31 138.3 193 39.9
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.3e-29 133.3 92 75.0
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 2.9e-29 132.9 113 64.6
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 3.8e-29 132.5 92 75.0
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 4.3e-28 129.0 92 71.7
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.6e-27 125.9 92 71.7
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 4.0e-26 122.5 92 69.6
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 6.8e-26 121.7 92 69.6
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.5e-25 120.6 113 59.3
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 8.3e-24 114.8 167 41.3
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.1e-23 114.4 82 69.5
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 7.0e-23 111.7 203 33.5
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 4.6e-22 109.0 200 33.5
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 3.0e-21 106.3 89 61.8
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.6e-21 105.1 98 55.1
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.9e-20 103.6 94 56.4
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.1e-19 100.1 94 55.3
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 5.2e-18 95.5 76 63.2
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.5e-17 94.0 58 81.0
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 3.5e-14 82.8 219 31.1
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 4.6e-14 82.4 73 54.8
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.1e-12 77.8 74 51.4
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.3e-12 76.3 52 69.2
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 6.2e-11 72.0 82 47.6
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 7.5e-09 65.1 52 61.5
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 1.7e-08 63.9 47 74.5
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 1.7e-08 63.9 118 35.6
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 4.9e-08 62.4 48 68.8
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 3.2e-07 59.7 47 61.7
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 7.8e-06 55.1 46 58.7


User provided reference genes

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