Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039000 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 2.7e-88 328.6 158 100.0
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 3.2e-73 278.5 142 94.4
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 2.1e-72 275.8 141 93.6
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 7.9e-72 273.9 142 91.5
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 1.1e-70 270.0 141 92.9
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 2.0e-70 269.2 142 91.5
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 2.0e-70 269.2 142 91.5
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 4.3e-70 268.1 142 92.3
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 9.7e-70 266.9 142 88.7
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 1.3e-69 266.5 142 88.7
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 1.3e-69 266.5 142 90.1
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.7e-69 266.2 142 89.4
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 2.2e-69 265.8 142 89.4
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 3.7e-69 265.0 141 87.2
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 6.3e-69 264.2 142 88.7
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 8.2e-69 263.8 141 88.7
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 1.1e-68 263.5 141 87.2
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 1.1e-68 263.5 142 88.7
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 1.8e-68 262.7 142 87.3
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 2.4e-68 262.3 142 88.7
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 2.4e-68 262.3 142 85.9
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.1e-68 261.9 142 87.3
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 4.1e-68 261.5 142 88.0
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 4.1e-68 261.5 142 89.4
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 5.3e-68 261.2 142 87.3
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 5.3e-68 261.2 141 86.5
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 6.9e-68 260.8 143 88.8
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 1.5e-67 259.6 142 89.4
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 2.6e-67 258.8 142 84.5
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 3.4e-67 258.5 143 84.6
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 4.5e-67 258.1 140 85.0
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 5.9e-67 257.7 141 86.5
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 5.9e-67 257.7 148 86.5
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 7.7e-67 257.3 142 85.2
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 1.3e-66 256.5 141 86.5
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.7e-66 256.1 142 84.5
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 2.9e-66 255.4 142 86.6
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 2.9e-66 255.4 142 86.6
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 5.0e-66 254.6 150 82.7
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 5.0e-66 254.6 141 85.1
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 8.5e-66 253.8 142 83.8
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 1.1e-65 253.4 142 85.2
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 2.5e-65 252.3 142 83.8
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 3.2e-65 251.9 142 84.5
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 3.2e-65 251.9 141 85.8
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 4.2e-65 251.5 142 87.3
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 4.2e-65 251.5 142 86.6
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 4.2e-65 251.5 141 85.1
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 4.2e-65 251.5 142 85.2
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 4.2e-65 251.5 142 85.9
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 7.2e-65 250.8 142 85.2
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 7.2e-65 250.8 140 83.6
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 7.2e-65 250.8 140 83.6
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 7.2e-65 250.8 142 84.5
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 9.4e-65 250.4 143 85.3
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 9.4e-65 250.4 155 78.7
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 1.2e-64 250.0 141 82.3
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 1.6e-64 249.6 142 83.8
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 2.1e-64 249.2 140 82.9
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 2.1e-64 249.2 140 85.0
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 2.7e-64 248.8 143 83.9
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.7e-64 248.8 140 82.9
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.7e-64 248.8 140 82.9
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 3.6e-64 248.4 141 83.0
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 6.1e-64 247.7 141 81.6
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 6.1e-64 247.7 140 85.7
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 7.9e-64 247.3 142 83.8
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.8e-63 246.1 143 79.7
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 2.3e-63 245.7 140 81.4
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 2.3e-63 245.7 141 83.7
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 3.9e-63 245.0 141 82.3
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 3.9e-63 245.0 143 82.5
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 3.9e-63 245.0 140 82.1
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 3.9e-63 245.0 141 83.0
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 5.1e-63 244.6 141 80.9
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 5.1e-63 244.6 143 79.7
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 3.3e-62 241.9 141 77.3
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 5.7e-62 241.1 141 82.3
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 7.4e-62 240.7 143 82.5
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 9.7e-62 240.4 163 73.6
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.7e-61 239.6 144 81.9
QL10p058686 Quercus lobata HOM05D003188 ORTHO05D003602 3.7e-61 238.4 138 85.5
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 4.8e-61 238.0 142 79.6
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 6.3e-61 237.7 144 81.9
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 6.3e-61 237.7 142 80.3
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 1.1e-60 236.9 141 80.9
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 1.8e-60 236.1 141 80.1
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.8e-60 236.1 141 77.3
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.8e-60 236.1 142 79.6
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 3.1e-60 235.3 141 80.1
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 5.3e-60 234.6 141 77.3
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 7.0e-60 234.2 136 81.6
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 9.1e-60 233.8 141 80.1
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 2.0e-59 232.6 142 78.9
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 7.7e-59 230.7 141 80.1
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 7.7e-59 230.7 141 80.1
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.0e-58 230.3 142 77.5
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 1.3e-58 229.9 142 74.6
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 3.8e-58 228.4 142 73.9
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 3.2e-57 225.3 140 78.6
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 1.2e-56 223.4 141 75.9
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 1.2e-56 223.4 142 71.1
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 1.6e-56 223.0 142 77.5
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 2.1e-56 222.6 143 75.5
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 6.1e-56 221.1 142 74.6
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 8.0e-56 220.7 142 72.5
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 8.0e-56 220.7 138 76.1
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 8.0e-56 220.7 122 82.8
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 1.4e-55 219.9 141 73.8
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.3e-55 219.2 142 72.5
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.3e-55 219.2 142 72.5
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.3e-55 219.2 142 72.5
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 2.3e-55 219.2 142 72.5
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 4.0e-55 218.4 139 77.0
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 8.8e-55 217.2 159 73.6
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.1e-54 216.9 142 73.2
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.5e-54 216.5 142 73.2
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 1.5e-54 216.5 145 77.2
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 2.6e-54 215.7 142 71.1
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 7.5e-54 214.2 142 72.5
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 2.2e-53 212.6 141 72.3
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 4.8e-53 211.5 144 75.7
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 1.8e-52 209.5 145 70.3
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 5.3e-52 208.0 142 73.2
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 7.7e-51 204.1 144 63.9
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 1.0e-50 203.8 139 72.7
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 3.8e-50 201.8 142 69.0
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 2.5e-49 199.1 142 74.6
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 4.2e-49 198.4 142 70.4
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 5.5e-49 198.0 142 65.5
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 2.1e-48 196.1 138 66.7
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 2.7e-48 195.7 141 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 4.7e-48 194.9 146 65.1
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.0e-47 193.7 140 67.1
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 2.3e-47 192.6 141 64.5
arahy.Tifrunner.gnm1.ann1.NH5Z51 Arachis hypogaea HOM05D003188 ORTHO05D003602 3.0e-47 192.2 141 68.8
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 5.2e-47 191.4 146 64.4
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 8.8e-47 190.7 142 67.6
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.4e-46 188.7 142 66.9
FAN04G1160 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.8e-46 187.2 136 66.9
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 4.5e-43 178.3 140 67.9
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 2.2e-42 176.0 141 64.5
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 6.5e-42 174.5 128 64.1
Rhsim09G0110400 Rhododendron simsii HOM05D003188 ORTHO05D003602 6.5e-42 174.5 88 95.5
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 8.5e-42 174.1 122 69.7
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 1.2e-40 170.2 141 61.0
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.6e-40 169.9 142 58.5
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 4.7e-40 168.3 116 69.0
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 4.0e-39 165.2 134 58.2
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 2.6e-38 162.5 134 57.5
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 2.6e-38 162.5 144 56.2
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.6e-38 162.5 123 64.2
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.6e-38 162.5 123 64.2
FAN08G0088 Fragaria x ananassa HOM05D003188 ORTHO05D003602 5.7e-38 161.4 88 85.2
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 1.3e-37 160.2 134 57.5
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 1.3e-37 160.2 134 57.5
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 4.9e-37 158.3 110 67.3
Cpa.g.sc79.50 Carica papaya HOM05D003188 ORTHO05D003602 8.3e-37 157.5 125 64.0
FvH4_4g17460 Fragaria vesca HOM05D003188 ORTHO05D003602 1.8e-36 156.4 81 87.7
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 4.1e-36 155.2 153 54.9
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 2.0e-35 152.9 135 57.0
Sed0006028 Sechium edule HOM05D003188 ORTHO05D003602 5.9e-35 151.4 107 70.1
FvH4_6g19571 Fragaria vesca HOM05D003188 ORTHO05D003602 3.3e-33 145.6 81 84.0
arahy.Tifrunner.gnm1.ann1.Y7FW0X Arachis hypogaea HOM05D003188 ORTHO05D003602 3.0e-31 139.0 140 54.3
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 1.5e-30 136.7 138 54.3
arahy.Tifrunner.gnm1.ann1.LTYE9H Arachis hypogaea HOM05D003188 ORTHO05D003602 2.7e-27 125.9 142 50.0
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 7.3e-25 117.9 123 50.4
SHI18941 Sapria himalayana HOM05D003188 ORTHO05D003602 8.0e-24 114.4 142 50.0
Os12g0140266 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 2.0e-19 99.8 116 46.6
EL10Ac4g09232 Beta vulgaris HOM05D003188 ORTHO05D003602 3.5e-19 99.0 135 43.7
HPP92_015357 Vanilla planifolia HOM05D001092 ORTHO05D000923 1.5e-17 93.6 63 71.4
Cc05_g04950 Coffea canephora HOM05D003188 ORTHO05D003602 2.8e-16 89.4 79 57.0
Cre11.g481550 Chlamydomonas reinhardtii HOM05D003188 ORTHO05D003602 3.4e-14 82.4 136 37.5
FAN11G0282 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.4e-14 82.0 39 89.7
FAN12G3292 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.8e-14 80.9 44 84.1
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 2.2e-13 79.7 78 56.4
Os11g0137500 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.9e-12 76.6 53 56.6
FAN14G3422 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.2e-12 75.9 39 82.1
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.1e-12 75.5 123 39.0
PRCOL_00002792 Prasinoderma coloniale HOM05D003188 ORTHO05D003602 4.1e-12 75.5 134 35.1
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.7e-11 72.8 123 39.0
MCO04G055 Micromonas commoda HOM05D003188 ORTHO05D003602 3.9e-10 68.9 113 36.3
unitig_699.g19608 Utricularia gibba HOM05D003188 ORTHO05D003602 1.9e-09 66.6 121 34.7
AL7G33340 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 8.1e-08 61.2 51 64.7
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 2.3e-07 59.7 43 65.1


User provided reference genes

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