Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.3e-92 341.3 167 100.0
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.5e-52 209.1 146 80.1
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.3e-52 208.4 160 70.6
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.8e-16 89.0 99 58.6
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 4.2e-15 85.5 96 54.2
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 7.2e-15 84.7 95 55.8
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.1e-14 83.2 104 52.9
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.7e-14 82.8 92 58.7
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.7e-14 82.8 82 56.1
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.6e-14 82.4 91 60.4
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.1e-14 81.6 96 53.1
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 8.0e-14 81.3 98 55.1
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.0e-13 80.9 96 53.1
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.3e-13 79.7 93 51.6
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.0e-13 79.3 94 55.3
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.0e-13 79.3 94 55.3
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 3.0e-13 79.3 92 51.1
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 5.2e-13 78.6 115 46.1
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 5.2e-13 78.6 92 51.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.7e-13 78.2 82 52.4
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 6.7e-13 78.2 94 52.1
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 8.8e-13 77.8 94 51.1
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.8e-13 77.8 83 55.4
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 8.8e-13 77.8 94 52.1
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 8.8e-13 77.8 92 51.1
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 8.8e-13 77.8 93 51.6
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 8.8e-13 77.8 92 51.1
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 8.8e-13 77.8 92 55.4
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 8.8e-13 77.8 98 50.0
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 8.8e-13 77.8 98 50.0
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 1.2e-12 77.4 96 51.0
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.5e-12 77.0 97 47.4
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.5e-12 77.0 90 48.9
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.0e-12 76.6 92 51.1
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 2.6e-12 76.3 94 52.1
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 2.6e-12 76.3 92 50.0
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.6e-12 76.3 92 50.0
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 3.3e-12 75.9 94 52.1
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.3e-12 75.9 104 47.1
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 3.3e-12 75.9 92 48.9
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 3.3e-12 75.9 92 50.0
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.3e-12 75.9 94 53.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.3e-12 75.9 85 55.3
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 4.4e-12 75.5 96 53.1
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 4.4e-12 75.5 92 47.8
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 4.4e-12 75.5 92 48.9
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 4.4e-12 75.5 86 50.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 5.7e-12 75.1 89 48.3
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 5.7e-12 75.1 92 48.9
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 5.7e-12 75.1 92 50.0
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 5.7e-12 75.1 92 52.2
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 5.7e-12 75.1 93 49.5
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 5.7e-12 75.1 82 54.9
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 5.7e-12 75.1 92 48.9
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 5.7e-12 75.1 93 50.5
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 5.7e-12 75.1 94 51.1
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 5.7e-12 75.1 92 50.0
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 7.5e-12 74.7 82 54.9
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 7.5e-12 74.7 83 51.8
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 9.7e-12 74.3 97 48.5
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 9.7e-12 74.3 92 48.9
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 9.7e-12 74.3 92 48.9
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 9.7e-12 74.3 92 48.9
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 9.7e-12 74.3 97 48.5
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 9.7e-12 74.3 92 47.8
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.3e-11 73.9 92 48.9
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.3e-11 73.9 82 52.4
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.3e-11 73.9 92 50.0
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.3e-11 73.9 92 50.0
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.7e-11 73.6 90 51.1
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.2e-11 73.2 92 50.0
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.2e-11 73.2 92 47.8
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 2.2e-11 73.2 90 48.9
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.2e-11 73.2 97 50.5
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 2.2e-11 73.2 92 50.0
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.8e-11 72.8 96 47.9
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.8e-11 72.8 92 47.8
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 2.8e-11 72.8 97 48.5
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.8e-11 72.8 92 48.9
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 2.8e-11 72.8 92 48.9
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.7e-11 72.4 90 48.9
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 3.7e-11 72.4 90 48.9
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 4.8e-11 72.0 84 51.2
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 4.8e-11 72.0 92 50.0
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 4.8e-11 72.0 92 46.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 6.3e-11 71.6 90 48.9
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 6.3e-11 71.6 90 48.9
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.3e-11 71.6 82 50.0
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 6.3e-11 71.6 90 47.8
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 6.3e-11 71.6 92 47.8
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 8.2e-11 71.2 90 47.8
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 8.2e-11 71.2 90 47.8
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 8.2e-11 71.2 92 48.9
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.2e-11 71.2 82 50.0
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-10 70.9 90 47.8
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-10 70.9 90 47.8
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.1e-10 70.9 90 47.8
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-10 70.9 92 46.7
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.4e-10 70.5 90 52.2
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.4e-10 70.5 102 44.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.4e-10 70.5 94 46.8
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.4e-10 70.5 90 47.8
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.4e-10 70.5 90 47.8
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.8e-10 70.1 92 44.6
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.8e-10 70.1 92 48.9
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.4e-10 69.7 95 48.4
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.4e-10 69.7 95 48.4
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 2.4e-10 69.7 90 48.9
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 3.1e-10 69.3 82 48.8
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.1e-10 69.3 82 48.8
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.1e-10 68.9 94 46.8
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 7.0e-10 68.2 92 47.8
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 7.0e-10 68.2 83 47.0
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 7.0e-10 68.2 92 47.8
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 9.1e-10 67.8 83 47.0
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 9.1e-10 67.8 80 47.5
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 9.1e-10 67.8 82 48.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.2e-09 67.4 85 48.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.6e-09 67.0 94 44.7
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-09 67.0 92 46.7
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 2.7e-09 66.2 92 47.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.7e-09 66.2 82 45.1
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.5e-09 65.9 81 46.9
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 3.5e-09 65.9 110 39.1
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.5e-09 65.9 81 45.7
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 5.9e-09 65.1 90 45.6
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 5.9e-09 65.1 80 45.0
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-08 64.3 81 44.4
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-08 64.3 81 44.4
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-08 64.3 81 44.4
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-08 63.9 85 44.7
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.7e-08 63.5 90 45.6
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.2e-08 63.2 87 42.5
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 2.2e-08 63.2 104 45.2
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.8e-08 62.4 80 45.0
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 6.5e-08 61.6 92 44.6
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.5e-08 61.6 81 43.2
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.5e-08 61.6 81 43.2
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.1e-07 60.8 96 43.8
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-07 60.5 81 43.2
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.5e-07 59.7 92 43.5
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 4.2e-07 58.9 85 45.9
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 7.2e-07 58.2 82 41.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 2.7e-06 56.2 82 39.0
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.7e-06 56.2 82 41.5
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.7e-06 56.2 82 45.1


User provided reference genes

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