Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 1.9e-228 795.4 379 100.0
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 5.5e-212 740.7 379 91.3
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 2.7e-211 738.4 378 91.0
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 3.9e-202 708.0 378 87.8
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 9.7e-201 703.4 379 85.5
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 6.3e-200 700.7 379 85.5
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 4.5e-198 694.5 377 84.6
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.9e-197 691.8 379 84.4
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 6.5e-197 690.6 379 84.4
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.2e-196 688.3 379 82.8
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 1.2e-195 686.4 377 82.2
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.0e-194 683.3 379 83.1
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 1.4e-194 682.9 379 82.8
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 8.8e-194 680.2 379 82.8
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 4.4e-193 677.9 379 81.8
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 7.5e-193 677.2 374 83.4
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.7e-192 676.0 379 81.5
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.2e-192 675.6 379 81.5
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 8.2e-192 673.7 380 82.4
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.1e-191 673.3 381 81.9
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.4e-191 672.9 379 81.5
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 2.2e-189 665.6 384 84.9
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 4.2e-188 661.4 377 79.6
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 2.7e-187 658.7 379 79.2
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 8.0e-187 657.1 379 80.2
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.0e-186 656.8 377 79.0
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 4.0e-186 654.8 380 80.0
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.2e-184 649.0 388 77.8
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 3.7e-184 648.3 381 77.4
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 6.3e-184 647.5 376 79.5
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.4e-183 646.4 378 80.2
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.8e-183 646.0 383 78.6
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 1.8e-183 646.0 378 79.1
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 2.0e-182 642.5 383 80.2
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.7e-182 642.1 380 78.2
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 5.9e-182 641.0 379 78.6
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.2e-181 639.0 382 78.0
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 6.5e-181 637.5 418 72.7
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.5e-180 636.3 375 78.7
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 5.5e-180 634.4 373 76.7
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 5.5e-180 634.4 373 76.7
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 1.2e-179 633.3 327 91.4
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 2.1e-179 632.5 373 75.9
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.6e-179 631.7 373 76.1
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 4.7e-179 631.3 373 75.9
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 8.0e-179 630.6 373 75.9
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 8.0e-179 630.6 388 76.8
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 2.3e-178 629.0 373 76.1
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 2.3e-178 629.0 373 76.1
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 2.3e-178 629.0 373 76.1
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 4.0e-178 628.2 373 76.4
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 5.2e-178 627.9 376 75.8
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 8.8e-178 627.1 373 75.9
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 1.2e-177 626.7 383 75.5
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 1.4e-175 619.8 374 76.2
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 1.8e-175 619.4 376 75.3
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 2.4e-175 619.0 375 75.5
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 3.1e-175 618.6 379 76.8
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 3.1e-175 618.6 341 82.7
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 5.4e-175 617.8 369 77.8
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 2.7e-174 615.5 379 76.0
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.7e-174 615.5 379 75.7
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 5.9e-174 614.4 374 75.7
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 5.9e-174 614.4 379 76.3
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 7.8e-174 614.0 394 73.6
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.7e-173 612.8 380 75.8
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.9e-173 612.1 374 75.4
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 5.0e-173 611.3 374 75.4
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.2e-170 601.3 356 78.1
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 3.4e-169 598.6 388 73.5
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 2.4e-167 592.4 339 80.8
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 3.2e-167 592.0 369 75.6
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 4.1e-167 591.7 361 75.9
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.0e-165 587.0 383 72.8
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 3.9e-165 585.1 378 73.3
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.1e-164 583.6 412 67.0
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 2.5e-164 582.4 368 73.1
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 4.3e-164 581.6 379 71.8
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 8.0e-163 577.4 379 72.6
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 5.8e-161 571.2 379 70.7
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-160 570.1 384 69.5
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.3e-160 570.1 335 78.2
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 2.4e-159 565.8 379 69.9
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 7.0e-159 564.3 380 71.8
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.6e-158 563.1 375 69.9
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.0e-157 560.5 370 71.4
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 3.0e-157 558.9 370 69.7
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 3.3e-156 555.4 376 69.1
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.6e-155 553.1 321 78.8
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.8e-154 549.7 361 71.5
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 4.0e-154 548.5 281 88.3
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 8.9e-154 547.4 376 68.6
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 3.4e-153 545.4 376 68.1
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 3.4e-153 545.4 376 68.4
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.7e-152 543.1 371 69.3
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.7e-152 543.1 376 68.1
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.7e-152 543.1 379 68.9
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.2e-152 542.7 377 68.2
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 2.9e-152 542.3 335 74.6
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 6.4e-152 541.2 358 75.4
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.1e-151 540.4 376 68.4
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 5.4e-151 538.1 376 67.3
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 3.0e-149 532.3 376 66.5
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 6.6e-149 531.2 366 69.1
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 8.1e-147 524.2 378 65.6
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 8.1e-147 524.2 378 65.6
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 3.5e-142 508.8 379 64.9
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 1.3e-141 506.9 379 66.5
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.5e-140 503.4 377 62.3
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.8e-139 499.2 376 63.6
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.3e-136 490.3 253 87.4
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 1.6e-134 483.4 257 84.4
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 8.4e-128 461.1 386 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.4e-127 460.3 366 59.6
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.8e-125 453.4 253 79.1
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 9.6e-124 447.6 281 72.2
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.6e-123 446.8 386 54.1
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 4.0e-122 442.2 377 56.0
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.3e-117 426.4 381 53.8
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 4.9e-112 408.7 224 82.6
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 3.0e-109 399.4 376 54.0
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 6.3e-107 391.7 306 63.4
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.4e-95 354.0 309 55.7
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.5e-84 317.4 536 35.6
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.8e-82 310.5 220 67.7
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.2e-80 303.5 220 68.6
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 1.4e-77 294.3 213 71.4
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.2e-75 287.0 153 91.5
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.7e-72 277.3 147 86.4
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 3.8e-72 276.2 271 52.4
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.5e-71 273.5 144 86.8
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 7.5e-68 261.9 368 39.1
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 2.5e-63 246.9 146 77.4
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.4e-58 231.1 134 76.1
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.0e-48 196.1 154 59.1
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.4e-45 188.0 111 73.0
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 3.9e-40 169.9 286 32.9
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.5e-33 146.7 92 68.5
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 2.1e-30 137.5 286 30.1
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 2.6e-28 130.6 146 51.4
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 4.7e-22 109.8 57 80.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 2.4e-21 107.5 59 79.7
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.0e-21 106.7 66 74.2
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.7e-16 91.3 52 67.3
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.6e-14 84.7 78 51.3
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.2e-12 78.6 57 63.2
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 2.6e-12 77.4 48 77.1
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 5.4e-10 69.7 37 81.1
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 6.2e-06 56.2 142 28.9


User provided reference genes

Program Settings