Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.8e-235 817.8 408 100.0
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.3e-230 800.4 408 98.0
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.6e-185 652.9 427 77.8
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.6e-183 645.6 432 76.6
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 1.9e-173 612.8 406 76.6
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.8e-169 599.0 415 71.1
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 6.2e-169 597.8 440 73.0
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 7.6e-159 564.3 426 70.2
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.3e-158 563.5 450 64.4
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.8e-153 545.8 415 67.5
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 3.6e-153 545.4 433 66.5
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.4e-149 533.5 420 64.8
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 6.0e-148 528.1 390 67.2
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.8e-147 526.6 390 67.2
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.3e-146 521.9 390 66.4
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.1e-144 517.3 420 63.1
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.4e-144 516.9 391 66.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.1e-144 515.8 418 62.0
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 6.9e-144 514.6 433 62.1
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.5e-143 511.9 396 64.6
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.8e-142 508.8 412 63.6
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.5e-141 506.1 412 64.6
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 4.2e-141 505.4 407 63.4
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 5.5e-141 505.0 412 64.1
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 7.1e-141 504.6 389 64.5
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 9.3e-141 504.2 430 59.1
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 4.6e-140 501.9 406 63.5
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 6.7e-139 498.0 399 64.2
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 8.7e-139 497.7 392 65.1
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.5e-138 496.1 423 61.5
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 7.4e-138 494.6 406 62.8
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.3e-137 493.8 381 66.7
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 2.1e-137 493.0 424 61.1
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 3.7e-137 492.3 424 61.1
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 4.8e-137 491.9 412 61.4
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 4.8e-137 491.9 437 59.3
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.1e-136 490.7 424 60.4
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.8e-136 490.0 413 60.3
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 5.3e-136 488.4 412 61.7
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 6.9e-136 488.0 403 62.0
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 6.9e-136 488.0 424 60.1
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 4.5e-135 485.3 437 57.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 4.5e-135 485.3 452 56.6
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.2e-134 483.0 426 59.6
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 2.2e-134 483.0 417 60.7
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 3.8e-134 482.3 413 59.8
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 4.9e-134 481.9 410 59.5
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 3.2e-133 479.2 418 59.6
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 4.2e-133 478.8 424 60.6
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.6e-132 476.9 382 65.4
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.0e-132 474.9 413 59.6
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 7.9e-132 474.6 413 58.8
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.8e-131 473.4 447 57.3
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.9e-130 469.9 412 58.3
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.9e-130 469.9 400 60.2
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 2.5e-130 469.5 405 60.5
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 3.3e-130 469.2 400 60.2
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.3e-130 468.8 415 60.0
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 4.3e-130 468.8 429 58.5
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 8.2e-129 464.5 407 59.7
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.1e-128 464.2 427 60.2
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.4e-128 463.8 411 59.4
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 6.9e-128 461.5 356 64.3
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 2.0e-127 459.9 421 57.5
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 4.5e-127 458.8 346 67.9
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 5.9e-127 458.4 439 54.7
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.3e-126 457.2 411 58.2
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 9.4e-125 451.1 411 59.9
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.1e-124 448.4 433 57.7
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 6.1e-124 448.4 429 55.0
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.0e-123 447.6 412 57.5
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.5e-122 443.7 433 55.7
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 9.7e-122 441.0 420 56.7
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 9.7e-122 441.0 465 52.7
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 9.7e-122 441.0 368 62.5
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.8e-121 439.5 329 66.0
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 6.9e-120 434.9 435 54.0
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 1.5e-119 433.7 357 63.6
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.5e-119 433.7 384 60.2
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.9e-119 431.8 410 55.6
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 5.0e-118 428.7 389 58.9
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 5.0e-118 428.7 386 56.7
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.2e-116 424.1 391 57.0
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 4.4e-114 415.6 370 59.7
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.8e-112 410.2 441 52.4
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 2.6e-111 406.4 344 62.5
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.2e-109 399.4 398 55.8
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.6e-108 397.1 353 60.1
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.6e-108 397.1 403 54.6
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.8e-107 393.7 313 63.3
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 8.8e-107 391.3 330 61.2
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.1e-101 374.4 375 53.6
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.4e-96 356.7 306 61.4
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 5.0e-94 349.0 256 66.4
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 7.2e-93 345.1 408 48.3
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 7.5e-90 335.1 256 64.1
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.7e-89 334.0 410 48.0
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 2.4e-88 330.1 387 50.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.7e-87 326.6 227 69.2
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.4e-80 304.3 272 58.8
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 3.5e-79 299.7 325 52.9
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.3e-78 297.0 534 36.1
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 5.2e-75 285.8 408 44.9
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.4e-72 277.7 256 57.8
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 4.6e-71 272.7 250 61.6
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.7e-70 270.8 515 34.8
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.4e-67 261.2 419 38.4
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.0e-66 257.3 182 65.9
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.4e-66 256.1 191 63.4
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 4.4e-66 256.1 308 48.1
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.7e-65 254.2 221 57.0
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 3.0e-62 243.4 217 53.9
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 3.4e-58 229.9 421 40.4
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.3e-57 228.0 332 42.8
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 3.2e-56 223.4 302 45.7
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.1e-51 208.4 173 63.6
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 9.9e-50 201.8 185 55.7
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 2.7e-47 193.7 164 61.6
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 3.9e-46 189.9 273 41.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 3.6e-44 183.3 194 49.0
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.8e-35 154.5 143 58.7
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 3.1e-35 153.7 111 63.1
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.4e-34 150.2 111 60.4
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 3.4e-34 150.2 429 31.5
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 1.9e-32 144.4 125 54.4
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 3.2e-32 143.7 89 76.4
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 6.0e-31 139.4 391 27.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.5e-29 134.0 818 21.8
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 5.3e-27 126.3 93 67.7
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 3.4e-26 123.6 101 68.3
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.9e-25 120.6 152 47.4
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 3.8e-25 120.2 135 50.4
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 6.5e-25 119.4 86 73.3
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 6.5e-25 119.4 442 26.9
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 3.5e-15 87.0 236 28.0
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 1.1e-13 82.0 98 50.0
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.1e-11 75.5 297 25.6
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 1.2e-10 72.0 62 56.5
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.6e-10 70.9 269 25.7
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.6e-07 61.6 34 82.4
Actinidia27239 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.3e-06 57.8 66 48.5


User provided reference genes

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