Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 2421.4 1202 100.0
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 2082.4 1203 84.9
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 2061.2 1204 84.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 2035.0 1202 82.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 2011.5 1024 97.8
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1949.5 1203 79.0
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1941.4 1202 78.5
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1896.7 1203 76.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1827.8 1196 73.8
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1825.8 1170 75.8
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1824.3 1195 73.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1815.4 1193 73.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1805.4 1204 72.8
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1805.4 1203 73.6
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1804.6 1194 72.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1799.6 1202 72.9
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1791.2 1196 72.6
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1782.3 1196 72.3
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1780.4 1242 71.1
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1777.3 1197 72.4
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1774.2 1197 72.4
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1772.7 1196 71.7
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1771.1 1202 72.3
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1766.5 1203 70.7
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1765.7 1199 71.0
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1761.9 1197 71.8
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1759.2 1198 70.1
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1753.0 1205 70.0
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1752.3 1207 71.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1750.7 1196 71.1
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1750.7 1196 71.2
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1748.4 1196 71.2
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1746.9 1205 69.5
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1746.5 1196 70.9
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1746.5 1199 71.1
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1742.2 1196 70.9
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1741.1 1203 70.2
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1740.7 1210 70.4
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1734.9 1180 71.1
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1731.8 1209 69.3
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1722.2 1197 70.1
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1717.6 1172 71.2
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1716.0 1199 69.7
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1712.2 1196 68.9
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1705.3 1177 69.9
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1700.6 1154 70.7
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1699.9 1192 68.5
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1698.7 1196 69.0
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1695.6 1193 68.7
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1695.6 1202 68.9
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1695.2 1310 65.3
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1692.6 1261 66.1
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1689.5 1202 67.9
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1689.5 1202 68.6
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1688.7 1198 67.9
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1682.9 1195 67.9
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1679.5 1229 66.5
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1678.7 1202 67.1
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1678.7 1192 67.9
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1676.8 1212 67.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1672.1 1204 66.9
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1671.8 1196 67.7
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1671.4 1200 68.2
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1669.8 1208 67.3
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1669.1 1196 67.6
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1666.7 1239 65.5
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1666.4 1197 66.2
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1665.2 1202 68.5
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1658.7 1195 67.4
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1650.2 1202 67.8
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1647.5 1194 67.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1639.8 1205 66.4
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1620.9 1246 64.0
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1614.7 1131 68.6
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1604.7 1194 65.4
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1599.3 1209 65.3
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1593.9 1201 64.3
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1593.6 1199 64.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1590.9 1190 64.9
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1590.1 1194 64.8
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1587.8 1201 64.8
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1582.8 1195 64.4
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1582.4 1207 64.5
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1578.9 1177 64.7
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1576.2 1217 63.9
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1575.5 969 79.1
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1571.6 1211 64.1
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1569.3 1205 64.2
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1562.0 1239 61.9
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1559.3 1284 62.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1551.2 1203 62.6
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1550.4 1023 74.2
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1515.4 1193 63.0
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1473.8 986 73.3
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1471.4 1187 60.6
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1453.7 1193 62.2
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1452.2 1194 58.7
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1432.2 1206 59.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1349.7 1202 59.2
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1268.8 1187 56.6
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1251.9 1205 51.9
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1246.1 1188 51.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1243.8 1229 51.8
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1211.4 1208 53.4
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 0.0e+00 1177.2 716 81.7
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1167.5 1158 49.9
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1157.9 833 67.3
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1130.5 865 65.7
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.2e-299 1032.7 711 70.2
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 6.5e-299 1031.2 1179 51.4
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 9.3e-290 1000.7 759 64.4
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.5e-287 992.6 567 90.1
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 8.8e-272 941.0 1119 44.8
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.2e-244 850.9 1103 42.2
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 3.2e-229 799.7 754 56.4
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.5e-226 790.8 493 79.5
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.1e-225 786.9 582 66.5
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 7.8e-220 768.5 485 76.1
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.1e-164 584.3 400 70.0
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 9.4e-149 532.3 411 65.2
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 2.3e-139 501.1 592 48.5
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 7.2e-133 479.6 717 40.0
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 4.1e-96 357.5 259 65.6
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.4e-88 332.4 375 47.5
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.6e-76 292.4 179 79.9
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.1e-76 292.0 274 56.2
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.2e-63 249.6 289 45.7
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 6.7e-62 243.8 202 60.9
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.9e-58 230.7 293 43.7
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.4e-51 208.8 141 75.2
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 5.0e-49 201.1 234 47.0
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 7.2e-32 144.1 135 55.6
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 9.1e-27 127.1 158 46.2
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 2.6e-21 109.0 72 65.3
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 9.1e-19 100.5 202 36.6
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 3.2e-16 92.0 64 70.3
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 6.1e-15 87.8 55 70.9
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 3.0e-14 85.5 94 52.1
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 8.8e-14 84.0 68 63.2
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.4e-11 75.9 128 33.6
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 7.0e-11 74.3 97 44.3
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 3.5e-10 72.0 64 59.4
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.1e-08 67.0 58 63.8
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 2.3e-06 59.3 45 64.4


User provided reference genes

Program Settings