Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038211 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.4e-104 382.1 187 100.0
CSS0016001 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.1e-92 342.4 187 92.0
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.9e-66 254.6 164 79.9
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.4e-62 243.4 163 77.9
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.1e-61 240.4 165 77.0
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 3.7e-60 235.3 159 76.7
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 3.7e-60 235.3 159 76.7
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 2.9e-57 225.7 159 73.0
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 6.5e-57 224.6 159 72.3
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 4.2e-56 221.9 160 70.6
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 2.7e-55 219.2 159 70.4
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.6e-55 218.8 159 70.4
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 6.1e-55 218.0 159 70.4
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 6.1e-55 218.0 159 70.4
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.4e-54 216.9 159 70.4
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 1.8e-54 216.5 159 69.8
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 1.8e-54 216.5 159 71.1
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 3.0e-54 215.7 160 67.5
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 3.0e-54 215.7 161 69.6
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 4.0e-54 215.3 159 69.2
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 5.2e-54 214.9 159 69.2
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 8.8e-54 214.2 159 69.2
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 8.8e-54 214.2 159 69.2
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 8.8e-54 214.2 159 69.2
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 8.8e-54 214.2 159 69.2
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 1.2e-53 213.8 159 67.3
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 1.2e-53 213.8 159 68.6
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.5e-53 213.4 159 67.3
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 1.5e-53 213.4 159 67.3
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 1.5e-53 213.4 159 67.3
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.5e-53 213.4 159 67.3
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 1.5e-53 213.4 159 67.3
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.6e-53 212.6 159 68.6
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 2.6e-53 212.6 159 68.6
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 3.4e-53 212.2 159 66.7
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 3.4e-53 212.2 159 69.2
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 3.4e-53 212.2 159 66.7
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 3.4e-53 212.2 159 67.3
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 4.4e-53 211.8 159 66.0
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 4.4e-53 211.8 159 66.0
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 4.4e-53 211.8 159 68.6
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 4.4e-53 211.8 159 67.9
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.7e-53 211.5 159 67.3
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 7.5e-53 211.1 159 69.2
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 7.5e-53 211.1 159 67.3
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 7.5e-53 211.1 159 67.3
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 7.5e-53 211.1 159 66.7
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 9.8e-53 210.7 159 66.0
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 9.8e-53 210.7 159 66.0
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 9.8e-53 210.7 159 67.9
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 9.8e-53 210.7 159 68.6
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 9.8e-53 210.7 159 67.3
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.3e-52 210.3 159 67.3
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 1.3e-52 210.3 159 67.9
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 1.7e-52 209.9 159 66.0
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 1.7e-52 209.9 159 67.3
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 1.7e-52 209.9 159 67.3
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 1.7e-52 209.9 159 67.9
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.7e-52 209.9 171 64.3
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 2.2e-52 209.5 159 66.0
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 2.2e-52 209.5 159 65.4
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 2.2e-52 209.5 159 67.3
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.2e-52 209.5 159 66.7
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 2.8e-52 209.1 164 66.5
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 2.8e-52 209.1 159 67.3
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 2.8e-52 209.1 159 67.3
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 2.8e-52 209.1 159 68.6
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 3.7e-52 208.8 159 67.3
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 4.8e-52 208.4 159 66.0
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 4.8e-52 208.4 159 66.0
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 6.3e-52 208.0 159 68.6
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 6.3e-52 208.0 159 66.0
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 6.3e-52 208.0 159 66.7
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 6.3e-52 208.0 157 66.9
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 1.1e-51 207.2 159 66.7
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 1.1e-51 207.2 159 66.7
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 1.1e-51 207.2 159 66.7
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 65.4
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 1.4e-51 206.8 159 66.7
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 1.8e-51 206.5 159 65.4
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 1.8e-51 206.5 161 64.6
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 1.8e-51 206.5 161 64.6
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 1.8e-51 206.5 159 66.7
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 1.8e-51 206.5 159 66.7
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.8e-51 206.5 159 66.7
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.8e-51 206.5 159 66.7
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.8e-51 206.5 159 66.7
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 2.4e-51 206.1 159 64.2
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.4e-51 206.1 159 66.0
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 2.4e-51 206.1 159 66.0
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 3.1e-51 205.7 159 66.7
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.1e-51 205.7 159 66.7
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 4.1e-51 205.3 159 66.7
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 4.1e-51 205.3 159 66.0
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 5.4e-51 204.9 159 66.0
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 5.4e-51 204.9 159 64.8
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 5.4e-51 204.9 159 66.7
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 5.4e-51 204.9 159 66.0
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 9.1e-51 204.1 159 66.0
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 9.1e-51 204.1 157 66.2
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 9.1e-51 204.1 159 64.8
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 9.1e-51 204.1 159 64.8
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.2e-50 203.8 159 65.4
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.2e-50 203.8 159 66.7
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 1.6e-50 203.4 159 65.4
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.6e-50 203.4 159 65.4
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 1.6e-50 203.4 159 64.8
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 2.0e-50 203.0 161 64.0
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 2.0e-50 203.0 159 64.8
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 2.0e-50 203.0 159 64.8
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 2.7e-50 202.6 161 64.0
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.7e-50 202.6 159 64.8
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.5e-50 202.2 157 65.6
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.5e-50 202.2 159 66.0
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 4.5e-50 201.8 159 65.4
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 5.9e-50 201.4 159 64.8
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 5.9e-50 201.4 159 64.2
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 5.9e-50 201.4 159 64.2
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 1.0e-49 200.7 159 63.5
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 1.3e-49 200.3 159 63.5
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.7e-49 199.9 159 64.2
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 1.7e-49 199.9 159 64.2
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 63.5
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 2.9e-49 199.1 159 64.2
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 3.8e-49 198.7 159 63.5
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 3.8e-49 198.7 159 63.5
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 3.8e-49 198.7 159 64.2
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 5.0e-49 198.4 159 63.5
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 6.5e-49 198.0 159 62.9
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 6.5e-49 198.0 159 62.9
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 1.1e-48 197.2 159 62.3
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.5e-48 196.8 159 63.5
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 1.9e-48 196.4 157 63.7
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 1.9e-48 196.4 159 62.9
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 2.5e-48 196.1 173 59.0
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 4.2e-48 195.3 159 63.5
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 5.5e-48 194.9 159 61.6
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 7.2e-48 194.5 160 61.2
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 6.1e-47 191.4 152 64.5
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 8.0e-47 191.0 159 61.0
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 8.0e-47 191.0 159 62.9
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 1.8e-46 189.9 159 62.3
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 4.0e-46 188.7 158 60.8
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 9.8e-45 184.1 160 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 1.4e-43 180.3 160 56.9
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 1.4e-43 180.3 159 57.2
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 4.5e-42 175.3 160 54.4
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 1.3e-41 173.7 142 62.7
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.7e-41 173.3 160 55.6
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.7e-41 173.3 160 55.6
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 1.7e-41 173.3 161 54.0
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 2.9e-41 172.6 160 53.8
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 3.8e-41 172.2 158 55.1
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 3.2e-35 152.5 131 62.6
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 5.8e-29 131.7 115 60.0
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 2.9e-28 129.4 115 60.0
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 1.4e-27 127.1 115 57.4
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 1.1e-24 117.5 153 42.5
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 3.6e-23 112.5 105 56.2
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 2.0e-21 106.7 156 39.1
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 4.9e-20 102.1 160 35.0
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 5.4e-19 98.6 159 44.0
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 2.3e-17 93.2 156 37.2
CDE09G1104 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 6.6e-17 91.7 133 45.9
TPR.G40483 Trifolium pratense HOM05D003507 ORTHO05D004324 1.9e-16 90.1 46 89.1
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 5.2e-14 82.0 75 50.7
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 7.1e-11 71.6 44 75.0
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 4.3e-08 62.4 54 53.7
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 6.2e-07 58.5 100 36.0


User provided reference genes

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