Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037734 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 3.2e-47 191.4 97 100.0
CSS0011071 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D020046 1.3e-32 142.9 104 76.0
Cc06_g17870 Coffea canephora HOM05D003395 ORTHO05D004087 1.9e-12 75.9 48 81.2
Rhsim04G0105700 Rhododendron simsii HOM05D003395 ORTHO05D004087 5.7e-12 74.3 46 82.6
CANSAT80G0779 Cannabis sativa HOM05D003395 ORTHO05D004087 1.3e-11 73.2 44 86.4
CANSAT80G2433 Cannabis sativa HOM05D003395 ORTHO05D004087 1.3e-11 73.2 44 86.4
Eucgr.K01721 Eucalyptus grandis HOM05D003395 ORTHO05D004087 1.3e-11 73.2 44 86.4
MBI13_g36804_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.3e-11 73.2 44 86.4
MBI13_g36815_MAGBIO Magnolia biondii HOM05D003395 ORTHO05D004087 1.3e-11 73.2 44 86.4
Oeu008171.1 Olea europaea HOM05D003395 ORTHO05D004087 1.3e-11 73.2 44 86.4
Atru.chr1.1149 Acer truncatum HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Aqoxy2G00226 Aquilegia oxysepala HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
AL4G39710 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
AT2G41620 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
BcaC02g07302 Brassica carinata HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
A04p31720 Brassica napus HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
C04p69140 Brassica napus HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
BolC4t28411H Brassica oleracea HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
BraA04t18629Z Brassica rapa HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
CSS0000776 Camellia sinensis var. sinensis HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Carub.0004s2387 Capsella rubella HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
CARHR136710 Cardamine hirsuta HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Cpa.g.sc182.8 Carica papaya HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
CiPaw.09G039800 Carya illinoinensis HOM05D003395 ORTHO05D004087 1.6e-11 72.8 49 79.6
Haze_19811 Corylus avellana HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Haze_19814 Corylus avellana HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Dinv39652 Davidia involucrata HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
ECA236G0559 Erigeron canadensis HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
HanXRQChr04g0125091 Helianthus annuus HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Manes.11G065000 Manihot esculenta HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Nitab4.5_0000826g0280 Nicotiana tabacum HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 84.1
Peaxi162Scf00130g00723 Petunia axillaris HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 84.1
Potri.012G034800 Populus trichocarpa HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
QL07p003024 Quercus lobata HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Sp4g23860 Schrenkiella parvula HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Solyc04g016240.3 Solanum lycopersicum HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 84.1
Sopen04g008350 Solanum pennellii HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 84.1
PGSC0003DMG400012709 Solanum tuberosum HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 84.1
THA.LOC104817509 Tarenaya hassleriana HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
vmacro09059 Vaccinium macrocarpon HOM05D003395 ORTHO05D004087 1.6e-11 72.8 44 86.4
Aa31LG1G23630 Aethionema arabicum HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
MSTRG.26130 Avicennia marina HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
CAN.G676.13 Capsicum annuum HOM05D003395 ORTHO05D004087 2.2e-11 72.4 43 86.0
MELO3C009808.2 Cucumis melo HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
CsaV3_3G040740 Cucumis sativus L. HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
Migut.K00101 Erythranthe guttata HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
Lsat_1_v5_gn_8_82001 Lactuca sativa HOM05D003395 ORTHO05D004087 2.2e-11 72.4 43 88.4
Nn7g36372 Nelumbo nucifera HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
SalBow1G6094 Salvia bowleyana HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
SalBow6G3234 Salvia bowleyana HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
Sed0021456 Sechium edule HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
SGA_v2.0_scaffold94G28494 Striga asiatica HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 84.1
TAR633G2151 Trochodendron aralioides HOM05D003395 ORTHO05D004087 2.2e-11 72.4 44 86.4
DCAR_020506 Daucus carota HOM05D003395 ORTHO05D004087 2.8e-11 72.0 44 84.1
Sc19g0006620 Simmondsia chinensis HOM05D003395 ORTHO05D004087 2.8e-11 72.0 44 84.1
GSVIVG01033240001 Vitis vinifera HOM05D003395 ORTHO05D004087 2.8e-11 72.0 44 84.1
EL10Ac3g07130 Beta vulgaris HOM05D003395 ORTHO05D004087 3.7e-11 71.6 44 84.1
AUR62024500 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.7e-11 71.6 44 84.1
AUR62026086 Chenopodium quinoa HOM05D003395 ORTHO05D004087 3.7e-11 71.6 44 84.1
Lj1A1126G58 Lonicera japonica HOM05D003395 ORTHO05D004087 3.7e-11 71.6 44 84.1
Lj1A1128G63 Lonicera japonica HOM05D003395 ORTHO05D004087 3.7e-11 71.6 44 84.1
MD12G1080600 Malus domestica HOM05D003395 ORTHO05D004087 3.7e-11 71.6 47 78.7
Sabra12G0023800 Salix brachista HOM05D003395 ORTHO05D004087 3.7e-11 71.6 44 84.1
arahy.Tifrunner.gnm1.ann1.13YWQX Arachis hypogaea HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
arahy.Tifrunner.gnm1.ann1.C8DH2G Arachis hypogaea HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Ca_01074_v3 Cicer arietinum L. HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Ciclev10004294m.g Citrus clementina HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
COL.COLO4_22300 Corchorus olitorius HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Duzib128G1779 Durio zibethinus HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Thhalv10016231m.g Eutrema salsugineum HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Glyma.13G363900 Glycine max HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Glyma.15G010000 Glycine max HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Gohir.A11G309900 Gossypium hirsutum HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Gohir.D11G326700 Gossypium hirsutum HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Gorai.007G357300 Gossypium raimondii HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Lj3g0013293 Lotus japonicus HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Lalb_Chr14g0373701 Lupinus albus HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Lalb_Chr24g0395581 Lupinus albus HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Medtr2g103370 Medicago truncatula HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Phvul.005G175500 Phaseolus vulgaris HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Psat5g301400 Pisum sativum HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Prupe.7G054800 Prunus persica HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 81.8
Sabra15G0019300 Salix brachista HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Sabra15G0021800 Salix brachista HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
Thecc.05G151200 Theobroma cacao HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
TPR.G37242 Trifolium pratense HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
TWI74G0608 Tripterygium wilfordii HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 81.8
VMungo1080G0039 Vigna mungo HOM05D003395 ORTHO05D004087 4.8e-11 71.2 44 84.1
ATR0320G031 Amborella trichopoda HOM05D003395 ORTHO05D004087 6.3e-11 70.9 44 81.8
MD14G1076700 Malus domestica HOM05D003395 ORTHO05D004087 6.3e-11 70.9 47 78.7
Os03g0349000 Oryza sativa ssp. japonica HOM05D003395 ORTHO05D004087 6.3e-11 70.9 44 81.8
Ah.13g076590 Amaranthus hybridus HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 81.8
A09p50250 Brassica napus HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 81.8
C08p32740 Brassica napus HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 81.8
BolC8t50885H Brassica oleracea HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 81.8
BraA09t40475Z Brassica rapa HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 81.8
CARHR167550 Cardamine hirsuta HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 81.8
FvH4_6g24390 Fragaria vesca HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 79.5
FAN02G0096 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 79.5
FAN05G3635 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 79.5
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 79.5
PSO210G1603 Papaver somniferum HOM05D003395 ORTHO05D004087 8.2e-11 70.5 49 77.6
PSO210G2967 Papaver somniferum HOM05D003395 ORTHO05D004087 8.2e-11 70.5 49 77.6
RcHm_v2.0_Chr3g0483381 Rosa chinensis HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 79.5
Sp5g05250 Schrenkiella parvula HOM05D003395 ORTHO05D004087 8.2e-11 70.5 44 81.8
Carub.0005s2420 Capsella rubella HOM05D003395 ORTHO05D004087 1.1e-10 70.1 49 73.5
HPP92_001326 Vanilla planifolia HOM05D003395 ORTHO05D004087 1.1e-10 70.1 44 79.5
Zm00001eb016760 Zea mays HOM05D003395 ORTHO05D004087 1.1e-10 70.1 42 85.7
AT3G57350 Arabidopsis thaliana HOM05D003395 ORTHO05D004087 2.4e-10 68.9 44 79.5
Potri.015G026200 Populus trichocarpa HOM05D003395 ORTHO05D004087 2.4e-10 68.9 42 85.7
unitig_22.g5792 Utricularia gibba HOM05D003395 ORTHO05D004087 2.4e-10 68.9 44 79.5
AL5G38890 Arabidopsis lyrata HOM05D003395 ORTHO05D004087 3.1e-10 68.6 44 79.5
Mapoly0069s0022 Marchantia polymorpha HOM05D003395 ORTHO05D004087 3.1e-10 68.6 44 79.5
Nitab4.5_0006870g0040 Nicotiana tabacum HOM05D003395 ORTHO05D004087 3.1e-10 68.6 45 82.2
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.1e-10 68.2 44 77.3
Haze_09905 Corylus avellana HOM05D003395 ORTHO05D004087 1.2e-09 66.6 44 84.1
SMO203G0013 Selaginella moellendorffii HOM05D003395 ORTHO05D004087 1.5e-09 66.2 44 75.0
FvH4_4g17140 Fragaria vesca HOM05D003395 ORTHO05D020046 2.6e-09 65.5 62 54.8
Sabra18G0065400 Salix brachista HOM05D003395 ORTHO05D004087 2.6e-09 65.5 44 77.3
Gohir.A03G107600 Gossypium hirsutum HOM05D003395 ORTHO05D004087 3.4e-09 65.1 46 71.7
Pp3c6_19740 Physcomitrium patens HOM05D003395 ORTHO05D004087 3.4e-09 65.1 44 75.0
SEGI_19146 Sequoiadendron giganteum HOM05D003395 ORTHO05D004087 1.0e-08 63.5 44 72.7
FAN12G3185 Fragaria x ananassa HOM05D003395 ORTHO05D020046 3.8e-08 61.6 62 53.2
CBR_g4043 Chara braunii HOM05D003395 ORTHO05D004087 4.2e-07 58.2 44 63.6
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 9.3e-07 57.0 34 82.4
FAN12G1311 Fragaria x ananassa HOM05D003395 ORTHO05D020046 3.6e-06 55.1 62 50.0


User provided reference genes

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