Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 3.0e-34 147.9 72 100.0
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 8.7e-34 146.4 72 98.6
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 7.6e-30 133.3 72 88.9
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 1.0e-29 132.9 70 91.4
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 2.2e-29 131.7 70 90.0
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 3.8e-29 131.0 70 90.0
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 4.9e-29 130.6 70 88.6
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 8.4e-29 129.8 72 88.9
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 3.2e-28 127.9 70 82.9
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 5.5e-28 127.1 70 81.4
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 5.5e-28 127.1 70 81.4
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 7.1e-28 126.7 68 88.2
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 4.6e-27 124.0 70 82.9
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 1.8e-26 122.1 70 85.7
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 3.0e-26 121.3 68 80.9
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 3.9e-26 120.9 69 81.2
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.5e-25 119.0 69 81.2
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 5.7e-25 117.1 69 79.7
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 7.4e-25 116.7 70 77.1
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 4.8e-24 114.0 70 81.4
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 6.2e-24 113.6 70 84.3
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 4.0e-23 110.9 69 75.4
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 5.8e-22 107.1 70 78.6
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 5.8e-22 107.1 67 70.1
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 7.6e-22 106.7 69 69.6
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 1.7e-21 105.5 69 68.1
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 1.7e-21 105.5 118 51.7
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 2.2e-21 105.1 65 72.3
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 1.4e-20 102.4 56 89.3
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.9e-20 102.1 69 75.4
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 9.3e-20 99.8 86 62.8
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 2.1e-19 98.6 86 62.8
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 2.1e-19 98.6 52 94.2
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.7e-19 98.2 86 62.8
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.7e-19 98.2 86 62.8
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 3.5e-19 97.8 87 59.8
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 4.6e-19 97.4 70 62.9
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 4.6e-19 97.4 52 88.5
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 6.1e-19 97.1 86 60.5
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 7.9e-19 96.7 69 60.9
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 7.9e-19 96.7 70 71.4
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 1.0e-18 96.3 52 92.3
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.3e-18 95.9 54 81.5
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 2.3e-18 95.1 86 58.1
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 3.0e-18 94.7 86 58.1
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 3.0e-18 94.7 86 58.1
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 3.0e-18 94.7 86 58.1
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 3.0e-18 94.7 86 59.3
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 3.0e-18 94.7 86 59.3
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 3.9e-18 94.4 86 57.0
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 6.7e-18 93.6 56 78.6
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 8.7e-18 93.2 50 84.0
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 1.1e-17 92.8 86 57.0
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.5e-17 92.4 52 82.7
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.5e-17 92.4 52 82.7
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 1.5e-17 92.4 55 74.5
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 1.5e-17 92.4 54 77.8
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 1.9e-17 92.0 69 65.2
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.5e-17 91.7 52 82.7
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 5.7e-17 90.5 50 86.0
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 7.4e-17 90.1 50 86.0
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 7.4e-17 90.1 51 82.4
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 9.7e-17 89.7 50 84.0
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.6e-16 89.0 50 82.0
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 2.8e-16 88.2 51 84.3
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 2.8e-16 88.2 54 74.1
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 3.7e-16 87.8 72 63.9
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 3.7e-16 87.8 49 85.7
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 6.3e-16 87.0 50 82.0
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 6.3e-16 87.0 50 78.0
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 8.2e-16 86.7 50 82.0
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 8.2e-16 86.7 50 82.0
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 1.1e-15 86.3 50 80.0
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 1.4e-15 85.9 46 84.8
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.4e-15 85.9 46 84.8
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.4e-15 85.9 50 76.0
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.8e-15 85.5 46 82.6
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 1.8e-15 85.5 86 51.2
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 1.8e-15 85.5 51 82.4
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 2.4e-15 85.1 50 80.0
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 3.1e-15 84.7 69 60.9
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 3.1e-15 84.7 86 52.3
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 5.3e-15 84.0 45 91.1
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 5.3e-15 84.0 45 91.1
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 6.9e-15 83.6 49 79.6
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 6.9e-15 83.6 50 74.0
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 6.9e-15 83.6 70 64.3
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 9.0e-15 83.2 49 77.6
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 9.0e-15 83.2 86 50.0
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 9.0e-15 83.2 43 90.7
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 2.0e-14 82.0 44 90.9
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 2.6e-14 81.6 43 90.7
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 2.6e-14 81.6 48 77.1
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 3.4e-14 81.3 48 83.3
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 5.9e-14 80.5 86 50.0
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 7.7e-14 80.1 46 78.3
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.3e-13 79.3 40 87.5
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.3e-13 79.3 40 87.5
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 1.3e-13 79.3 63 50.8
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 1.3e-13 79.3 51 70.6
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 1.7e-13 79.0 67 47.8
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 1.7e-13 79.0 51 72.5
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 2.2e-13 78.6 84 48.8
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 8.5e-13 76.6 50 68.0
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 1.1e-12 76.3 70 52.9
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.1e-12 76.3 53 64.2
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 1.1e-12 76.3 86 46.5
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.4e-12 75.9 44 81.8
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 1.9e-12 75.5 86 46.5
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.2e-12 74.7 49 67.3
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 1.2e-11 72.8 66 48.5
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.6e-11 72.4 47 76.6
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 2.1e-11 72.0 77 50.6
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 2.7e-11 71.6 47 70.2
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 3.6e-11 71.2 49 67.3
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 3.0e-10 68.2 68 52.9
TWI18G0205 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 3.0e-10 68.2 67 49.3
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 3.3e-09 64.7 63 57.1
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 5.7e-09 63.9 70 48.6
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 1.3e-08 62.8 39 71.8
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 1.7e-08 62.4 38 73.7
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 4.8e-08 60.8 70 45.7
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 4.8e-08 60.8 39 69.2
BcaC06g31020 Brassica carinata HOM05D005515 ORTHO05D006620 8.2e-08 60.1 48 58.3
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 3.1e-07 58.2 38 68.4
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 4.1e-07 57.8 38 71.1
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 9.1e-07 56.6 38 65.8
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 1.2e-06 56.2 38 65.8
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 1.2e-06 56.2 38 65.8
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 1.2e-06 56.2 42 57.1
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 1.5e-06 55.8 50 56.0
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 5.9e-06 53.9 33 72.7
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 7.7e-06 53.5 38 63.2
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 7.7e-06 53.5 28 85.7


User provided reference genes

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