Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1786.5 890 100.0
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1595.1 897 89.4
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1588.9 897 89.3
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 0.0e+00 1574.7 898 88.1
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 0.0e+00 1551.2 897 87.5
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 0.0e+00 1505.0 973 80.1
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 0.0e+00 1489.9 898 83.7
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 0.0e+00 1479.2 897 83.2
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 0.0e+00 1476.5 897 82.9
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1475.7 897 83.3
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1475.3 897 82.7
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1461.4 897 82.4
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 0.0e+00 1461.0 894 82.9
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 0.0e+00 1459.9 897 82.1
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 0.0e+00 1459.1 897 82.4
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1456.4 894 82.2
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1455.7 901 82.0
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 0.0e+00 1455.3 899 82.0
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 0.0e+00 1455.3 903 80.7
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 0.0e+00 1451.4 897 81.8
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1451.4 898 81.4
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 0.0e+00 1448.0 897 81.9
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 0.0e+00 1446.8 897 80.9
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1440.2 900 81.2
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1438.7 897 81.4
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 0.0e+00 1436.0 900 80.8
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 0.0e+00 1433.3 903 80.6
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 0.0e+00 1431.0 897 79.7
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 0.0e+00 1428.7 897 80.9
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 0.0e+00 1425.2 899 80.8
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1424.5 899 79.8
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1424.1 900 79.9
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 0.0e+00 1423.3 897 80.7
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1423.3 897 80.7
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 0.0e+00 1416.7 898 79.8
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1413.7 897 80.0
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 0.0e+00 1412.9 897 79.9
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 0.0e+00 1412.1 899 78.9
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 0.0e+00 1411.7 897 78.6
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 0.0e+00 1411.4 897 79.8
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 0.0e+00 1409.0 897 78.7
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 0.0e+00 1407.9 897 79.7
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 0.0e+00 1407.1 899 79.8
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 0.0e+00 1406.3 897 79.4
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1404.8 899 78.4
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 0.0e+00 1402.5 925 77.8
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 0.0e+00 1398.6 911 77.9
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 0.0e+00 1394.4 897 79.0
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1392.5 899 78.3
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 0.0e+00 1391.3 900 77.9
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1390.9 899 77.4
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1390.9 899 77.4
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 0.0e+00 1389.8 897 79.3
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 0.0e+00 1389.0 900 77.6
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 0.0e+00 1386.7 911 78.0
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1384.8 899 77.9
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1384.8 899 77.6
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 0.0e+00 1375.1 897 77.3
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1373.6 907 76.6
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1369.0 897 76.9
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1366.7 900 77.1
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 0.0e+00 1364.7 897 76.7
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 0.0e+00 1364.0 898 78.4
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 0.0e+00 1364.0 900 76.7
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 0.0e+00 1359.0 864 79.5
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1356.7 900 76.0
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 0.0e+00 1355.5 897 76.7
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 0.0e+00 1353.6 900 76.2
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 0.0e+00 1352.4 897 76.5
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 0.0e+00 1351.7 897 75.7
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 0.0e+00 1351.3 897 76.3
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 0.0e+00 1351.3 900 75.9
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1350.5 914 74.8
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 0.0e+00 1347.0 900 75.8
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 0.0e+00 1340.9 926 75.4
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1336.6 901 75.2
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 0.0e+00 1332.0 899 75.3
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 0.0e+00 1324.7 898 75.1
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1323.1 905 75.4
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 0.0e+00 1316.2 897 74.4
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 0.0e+00 1314.7 911 75.3
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 0.0e+00 1314.3 897 75.1
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1312.7 903 74.1
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 0.0e+00 1312.7 905 74.7
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1311.2 919 73.2
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 0.0e+00 1311.2 919 73.2
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 0.0e+00 1309.7 900 75.0
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 0.0e+00 1306.2 905 73.7
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1305.8 912 73.5
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 0.0e+00 1302.3 904 73.5
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1299.6 913 73.1
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1297.3 913 73.1
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 0.0e+00 1297.3 913 73.1
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1294.3 900 73.6
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 0.0e+00 1293.5 914 72.8
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 0.0e+00 1290.8 911 72.8
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 0.0e+00 1288.9 897 74.6
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 0.0e+00 1287.3 934 71.4
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 0.0e+00 1283.9 947 70.4
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 0.0e+00 1281.5 901 71.9
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 0.0e+00 1277.7 909 74.0
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 0.0e+00 1274.2 948 71.8
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 0.0e+00 1237.2 903 70.1
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 0.0e+00 1234.2 850 74.2
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 0.0e+00 1226.8 900 70.2
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 0.0e+00 1220.7 901 70.7
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 0.0e+00 1214.1 897 70.9
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 0.0e+00 1207.2 871 73.1
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 0.0e+00 1192.6 897 68.7
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 0.0e+00 1124.0 756 76.3
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 0.0e+00 1116.7 876 66.6
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 0.0e+00 1109.7 927 64.6
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 1.8e-311 1072.4 901 63.5
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 2.7e-302 1042.0 756 71.3
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 3.3e-300 1035.0 899 61.6
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 1.0e-296 1023.5 930 60.2
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 6.7e-285 984.2 840 63.9
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 3.8e-272 941.8 865 57.7
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 1.6e-270 936.4 891 57.4
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 2.2e-259 899.4 900 57.3
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 2.5e-247 859.4 559 77.8
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 3.0e-245 852.4 506 87.9
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 8.3e-243 844.3 608 74.5
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 2.1e-217 760.0 913 47.3
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 3.0e-216 756.1 923 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 1.1e-194 684.5 903 44.3
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 9.7e-175 618.2 459 65.4
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 3.8e-155 553.1 354 78.0
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 1.7e-147 527.7 339 77.3
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 6.1e-145 519.2 343 81.9
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.3e-131 474.9 345 69.9
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 1.0e-91 342.4 290 62.4
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 1.7e-91 341.7 287 68.3
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 8.1e-89 332.8 991 28.5
SEGI_03870 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 4.9e-86 323.6 299 60.9
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 1.6e-76 292.0 277 59.6
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 6.2e-73 280.0 297 51.2
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 7.1e-69 266.5 381 42.5
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 2.1e-68 265.0 363 45.7
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 1.1e-56 226.1 287 48.1
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 9.4e-45 186.4 185 54.1
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.9e-43 181.0 120 74.2
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 1.1e-42 179.5 123 73.2
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.8e-35 155.6 107 70.1
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 1.8e-24 119.0 88 65.9
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.4e-24 118.6 57 94.7
GSVIVG01004520001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.7e-20 105.1 63 74.6
Psat1g020360 Pisum sativum HOM05D003523 ORTHO05D014542 2.6e-18 98.6 70 68.6
COL.COLO4_31503 Corchorus olitorius HOM05D003305 ORTHO05D001298 5.7e-18 97.4 279 34.4
COL.COLO4_31495 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.2e-17 95.5 53 79.2
MD05G1316000 Malus domestica HOM05D000005 ORTHO05D000012 4.8e-17 94.4 63 66.7
COL.COLO4_06328 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.4e-16 92.0 70 77.1
COL.COLO4_06329 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.4e-16 92.0 53 75.5
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.0e-14 86.7 118 49.2
Medtr4g010370 Medicago truncatula HOM05D003523 ORTHO05D004493 8.6e-14 83.6 73 52.1
Lsat_1_v5_gn_6_47040 Lactuca sativa HOM05D002560 ORTHO05D013255 1.5e-13 82.8 61 73.8
Psat0s3229g0080 Pisum sativum HOM05D003523 ORTHO05D004493 5.5e-13 80.9 41 87.8
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 8.0e-12 77.0 54 64.8
Medtr5g040120 Medicago truncatula HOM05D003523 ORTHO05D004493 2.3e-11 75.5 56 67.9
Psat6g243040 Pisum sativum HOM05D003523 ORTHO05D004493 5.2e-11 74.3 71 49.3
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 3.4e-10 71.6 80 51.2
Medtr7g039500 Medicago truncatula HOM05D003523 ORTHO05D004493 4.4e-10 71.2 56 66.1
CAN.G330.11 Capsicum annuum HOM05D000087 ORTHO05D115501 9.8e-10 70.1 89 44.9
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 8.3e-09 67.0 59 66.1
arahy.Tifrunner.gnm1.ann1.XFU5ID Arachis hypogaea HOM05D003523 ORTHO05D004493 4.1e-08 64.7 29 89.7
Medtr3g057920 Medicago truncatula HOM05D003523 ORTHO05D004493 5.4e-08 64.3 93 43.0
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 7.0e-08 63.9 38 73.7
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 1.2e-07 63.2 33 87.9
Lsat_1_v5_gn_6_40740 Lactuca sativa HOM05D000146 ORTHO05D002370 2.7e-07 62.0 33 87.9
Lsat_1_v5_gn_8_41901 Lactuca sativa HOM05D003523 ORTHO05D232231 2.7e-07 62.0 33 87.9
Medtr3g057930 Medicago truncatula HOM05D003523 ORTHO05D259677 2.7e-07 62.0 139 37.4
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 2.7e-07 62.0 34 79.4
Lsat_1_v5_gn_6_42641 Lactuca sativa HOM05D000146 ORTHO05D002370 1.0e-06 60.1 33 84.8
Lsat_1_v5_gn_2_131541 Lactuca sativa HOM05D002783 ORTHO05D229066 1.7e-06 59.3 33 81.8
Lsat_1_v5_gn_9_124840 Lactuca sativa HOM05D003523 ORTHO05D233239 2.9e-06 58.5 33 81.8


User provided reference genes

Program Settings