Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.3e-137 492.3 257 100.0
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 4.1e-94 348.6 271 72.3
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.0e-92 342.4 279 69.9
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 1.2e-88 330.5 277 66.8
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 2.6e-88 329.3 255 71.4
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 3.7e-87 325.5 264 72.0
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.7e-84 316.6 248 70.2
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 1.7e-84 316.6 264 67.4
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 4.3e-83 312.0 247 69.6
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 1.2e-82 310.5 247 69.6
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.6e-82 308.9 280 65.0
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 3.6e-82 308.9 249 68.7
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 6.2e-82 308.1 271 64.6
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 2.3e-81 306.2 249 68.7
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 3.1e-81 305.8 233 73.0
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 5.2e-81 305.1 296 62.5
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 5.2e-81 305.1 265 65.3
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 8.9e-81 304.3 249 68.7
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.2e-80 303.9 265 64.9
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 3.4e-80 302.4 269 65.1
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 3.7e-79 298.9 281 63.3
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 4.9e-79 298.5 240 68.8
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 6.4e-79 298.1 280 63.6
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 8.3e-79 297.7 279 63.4
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 8.3e-79 297.7 249 65.5
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 1.9e-78 296.6 281 63.0
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 2.4e-78 296.2 265 65.3
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 4.1e-78 295.4 280 62.9
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 4.1e-78 295.4 280 62.9
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 4.1e-78 295.4 253 64.4
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 5.4e-78 295.0 256 65.2
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.6e-77 293.5 282 62.1
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.7e-77 292.7 248 65.3
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 2.7e-77 292.7 256 65.2
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 2.7e-77 292.7 260 65.0
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 3.5e-77 292.4 280 62.5
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.5e-77 292.4 254 66.5
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 6.0e-77 291.6 257 65.4
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 7.8e-77 291.2 254 63.4
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 7.8e-77 291.2 280 62.1
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.0e-76 290.8 266 63.2
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.0e-76 290.8 256 64.5
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 1.3e-76 290.4 280 61.8
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 1.3e-76 290.4 240 67.5
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 1.3e-76 290.4 281 62.3
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.7e-76 290.0 249 65.1
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 1.7e-76 290.0 249 65.1
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.3e-76 289.7 263 63.1
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 3.0e-76 289.3 280 61.8
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.1e-75 287.3 256 64.8
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.1e-75 287.3 247 64.4
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.1e-75 287.3 244 65.6
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.1e-75 287.3 279 60.6
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.5e-75 287.0 254 65.0
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 3.3e-75 285.8 246 65.9
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 7.3e-75 284.6 251 62.5
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 7.3e-75 284.6 249 65.9
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.2e-74 283.9 286 59.4
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.6e-74 283.5 256 63.7
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 1.6e-74 283.5 256 63.7
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 2.1e-74 283.1 254 63.4
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 2.1e-74 283.1 253 64.8
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 3.6e-74 282.3 253 64.8
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 1.1e-73 280.8 262 63.7
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.4e-73 280.4 254 62.6
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.8e-73 280.0 272 59.9
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 3.1e-73 279.3 248 64.5
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 8.9e-73 277.7 244 63.5
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 1.2e-72 277.3 254 62.2
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 2.0e-72 276.6 206 72.8
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 2.0e-72 276.6 269 62.1
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 3.4e-72 275.8 269 60.6
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 9.9e-72 274.2 257 61.5
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.3e-71 273.9 256 64.8
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 1.7e-71 273.5 263 58.9
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.7e-71 273.5 265 61.9
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.8e-71 272.3 203 72.4
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 4.9e-71 271.9 266 59.8
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 4.9e-71 271.9 273 57.5
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-70 270.8 204 71.1
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.4e-70 270.4 267 59.9
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 1.4e-70 270.4 272 59.9
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.4e-70 270.4 200 73.5
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 4.1e-70 268.9 237 63.3
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 5.4e-70 268.5 242 62.4
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 1.6e-69 266.9 253 61.7
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.0e-68 264.2 240 62.9
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.3e-68 263.8 267 59.2
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 3.0e-68 262.7 240 62.9
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 5.1e-68 261.9 235 63.0
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 6.6e-68 261.5 243 63.4
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.5e-67 260.4 272 57.7
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 1.9e-67 260.0 260 60.0
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 4.3e-67 258.8 263 60.5
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 5.6e-67 258.5 245 60.0
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.6e-67 258.5 238 63.9
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 5.6e-67 258.5 236 61.4
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 7.3e-67 258.1 256 59.4
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 9.6e-67 257.7 253 60.1
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 2.1e-66 256.5 240 60.8
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 3.6e-66 255.8 262 60.7
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.6e-66 255.8 268 57.5
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.7e-66 255.4 268 57.1
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 6.2e-66 255.0 262 59.9
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 3.1e-65 252.7 261 59.4
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.6e-64 249.6 202 68.8
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 2.6e-64 249.6 202 68.8
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.4e-64 249.2 236 60.2
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.9e-63 246.1 262 55.0
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.9e-63 246.1 251 56.2
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 3.2e-62 242.7 265 53.2
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 9.3e-62 241.1 247 55.9
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 1.1e-59 234.2 230 58.3
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 1.6e-58 230.3 263 54.8
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 2.4e-57 226.5 263 54.4
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 8.4e-55 218.0 259 51.4
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 4.3e-51 205.7 143 77.6
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 1.1e-49 201.1 258 46.9
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 6.9e-49 198.4 250 47.2
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 3.4e-48 196.1 229 48.5
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 1.3e-47 194.1 242 47.1
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 2.2e-47 193.4 229 48.5
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 4.9e-47 192.2 267 43.8
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 1.2e-45 187.6 184 53.3
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.6e-37 160.6 134 66.4
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 1.5e-35 154.1 310 36.8
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 5.9e-32 142.1 139 58.3
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.6e-29 132.5 119 59.7
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 1.5e-27 127.5 88 68.2
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.5e-27 127.5 86 70.9
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 4.3e-27 125.9 88 67.0
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.7e-27 125.6 97 61.9
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 2.4e-25 120.2 85 68.2
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.4e-22 110.9 88 63.6
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 3.3e-11 73.2 96 44.8
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 2.6e-08 63.5 148 27.7
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 1.5e-06 57.8 145 30.3
THA.LOC104812895 Tarenaya hassleriana HOM05D000153 ORTHO05D002648 2.5e-06 57.0 37 73.0
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 5.5e-06 55.8 231 26.8


User provided reference genes

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