Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036844 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007039 3.4e-130 468.4 244 100.0
vmacro05140 Vaccinium macrocarpon HOM05D000032 ORTHO05D007039 6.5e-81 304.7 195 81.0
Hma1.2p1_0107F.1_g051290 Hydrangea macrophylla HOM05D000032 ORTHO05D007039 1.4e-80 303.5 200 75.0
CiPaw.16G019200 Carya illinoinensis HOM05D000032 ORTHO05D007039 2.4e-75 286.2 198 75.8
Lj4A689G43 Lonicera japonica HOM05D000032 ORTHO05D007039 2.4e-75 286.2 181 82.3
Manes.04G035200 Manihot esculenta HOM05D000032 ORTHO05D007039 5.3e-75 285.0 205 73.7
QL09p029474 Quercus lobata HOM05D000032 ORTHO05D007039 9.1e-75 284.3 195 75.9
Rhsim07G0177900 Rhododendron simsii HOM05D003181 ORTHO05D007039 2.9e-73 279.3 182 77.5
TAR381G0052 Trochodendron aralioides HOM05D000032 ORTHO05D007039 6.5e-73 278.1 206 73.3
GSVIVG01009983001 Vitis vinifera HOM05D000032 ORTHO05D007039 6.5e-73 278.1 202 75.7
Lju3549A0T30 Lonicera japonica HOM05D000032 ORTHO05D007039 5.5e-72 275.0 183 79.8
Potri.005G185900 Populus trichocarpa HOM05D000032 ORTHO05D007039 5.5e-72 275.0 186 75.3
SalBow6G7032 Salvia bowleyana HOM05D000032 ORTHO05D007039 2.1e-71 273.1 213 69.0
Ciclev10000341m.g Citrus clementina HOM05D000032 ORTHO05D007039 3.6e-71 272.3 202 71.8
Dinv25780 Davidia involucrata HOM05D000032 ORTHO05D007039 2.3e-70 269.6 198 71.2
Eucgr.F02760 Eucalyptus grandis HOM05D000032 ORTHO05D007039 2.3e-70 269.6 190 72.1
Sabra05G0142000 Salix brachista HOM05D001345 ORTHO05D007039 5.1e-70 268.5 198 72.2
Duzib041G0456 Durio zibethinus HOM05D000032 ORTHO05D007039 1.1e-69 267.3 203 70.4
Medtr4g079320 Medicago truncatula HOM05D000032 ORTHO05D007039 1.5e-69 266.9 208 69.7
arahy.Tifrunner.gnm1.ann1.5XB3VI Arachis hypogaea HOM05D000032 ORTHO05D007039 2.0e-69 266.5 204 70.1
Cfa015213 Carpinus fangiana HOM05D000032 ORTHO05D007039 7.4e-69 264.6 202 69.3
Ca_18908_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007039 9.7e-69 264.2 199 69.8
arahy.Tifrunner.gnm1.ann1.KPVC5H Arachis hypogaea HOM05D000032 ORTHO05D007039 2.2e-68 263.1 201 70.1
Glyma.03G001200 Glycine max HOM05D000032 ORTHO05D007039 6.3e-68 261.5 202 68.3
DCAR_014397 Daucus carota HOM05D000032 ORTHO05D007039 1.8e-67 260.0 203 67.5
Nn2g15381 Nelumbo nucifera HOM05D000032 ORTHO05D007039 3.1e-67 259.2 209 69.4
Cc00_g22660 Coffea canephora HOM05D000032 ORTHO05D007039 4.1e-67 258.8 173 74.0
MBI02_g35824_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007039 7.0e-67 258.1 192 69.3
Oeu045989.1 Olea europaea HOM05D000032 ORTHO05D007039 9.1e-67 257.7 204 71.1
TWI32G0140 Tripterygium wilfordii HOM05D000032 ORTHO05D007039 9.1e-67 257.7 200 69.5
Haze_01423 Corylus avellana HOM05D000032 ORTHO05D007039 1.5e-66 256.9 211 63.5
Gohir.A02G068600 Gossypium hirsutum HOM05D000032 ORTHO05D007039 1.5e-66 256.9 204 68.6
TPR.G34855 Trifolium pratense HOM05D000032 ORTHO05D007039 2.6e-66 256.1 217 62.7
Gohir.D02G075100 Gossypium hirsutum HOM05D000032 ORTHO05D007039 3.4e-66 255.8 204 67.6
MBI03_g28958_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007039 3.4e-66 255.8 192 69.3
Gorai.005G084500 Gossypium raimondii HOM05D000032 ORTHO05D007039 5.9e-66 255.0 204 67.6
MD07G1108300 Malus domestica HOM05D000032 ORTHO05D007039 1.0e-65 254.2 206 69.4
Peaxi162Scf00066g01631 Petunia axillaris HOM05D000032 ORTHO05D007039 1.3e-65 253.8 202 67.8
Prupe.2G131100 Prunus persica HOM05D000032 ORTHO05D007039 2.2e-65 253.1 208 66.3
Sopen10g004850 Solanum pennellii HOM05D000032 ORTHO05D007039 2.9e-65 252.7 203 68.5
Cpa.g.sc26.76 Carica papaya HOM05D000032 ORTHO05D007039 5.0e-65 251.9 175 74.9
COL.COLO4_35483 Corchorus olitorius HOM05D000032 ORTHO05D007039 5.0e-65 251.9 183 70.5
VMungo0331G2050 Vigna mungo HOM05D000032 ORTHO05D007039 5.0e-65 251.9 202 65.8
Glyma.16G221700 Glycine max HOM05D000032 ORTHO05D007039 6.5e-65 251.5 202 66.8
Solyc10g009070.3 Solanum lycopersicum HOM05D000032 ORTHO05D007039 6.5e-65 251.5 201 68.7
SGA_v2.0_scaffold25G11147 Striga asiatica HOM05D000032 ORTHO05D007039 2.5e-64 249.6 173 74.0
Thecc.08G139100 Theobroma cacao HOM05D000032 ORTHO05D007039 2.5e-64 249.6 194 68.6
Actinidia10684 Actinidia chinensis HOM05D000032 ORTHO05D007039 3.2e-64 249.2 148 82.4
HanXRQChr15g0473601 Helianthus annuus HOM05D000032 ORTHO05D007039 2.7e-63 246.1 196 68.4
Lsat_1_v5_gn_1_39880 Lactuca sativa HOM05D000703 ORTHO05D007039 2.7e-63 246.1 210 67.1
PSO017G0672 Papaver somniferum HOM05D000032 ORTHO05D007039 1.0e-62 244.2 228 58.3
Lj3g0011799 Lotus japonicus HOM05D000032 ORTHO05D007039 1.8e-62 243.4 208 63.9
PSO478G2531 Papaver somniferum HOM05D000032 ORTHO05D007039 2.3e-62 243.0 228 58.3
Aqoxy5G02326 Aquilegia oxysepala HOM05D000032 ORTHO05D007039 6.7e-62 241.5 217 62.2
Hund17378 Selenicereus undatus HOM05D000032 ORTHO05D007039 1.1e-61 240.7 187 66.3
CAN.G313.11 Capsicum annuum HOM05D000032 ORTHO05D007039 2.0e-61 240.0 173 68.8
FAN20G1738 Fragaria x ananassa HOM05D001345 ORTHO05D007039 2.6e-61 239.6 208 65.9
Phvul.010G059900 Phaseolus vulgaris HOM05D000032 ORTHO05D007039 3.3e-61 239.2 187 65.2
RcHm_v2.0_Chr6g0277821 Rosa chinensis HOM05D000032 ORTHO05D007039 4.4e-61 238.8 203 66.0
Migut.N03249 Erythranthe guttata HOM05D000032 ORTHO05D007039 5.7e-61 238.4 251 57.0
Lalb_Chr13g0294911 Lupinus albus HOM05D000032 ORTHO05D007039 5.7e-61 238.4 220 63.6
Psat7g166920 Pisum sativum HOM05D000032 ORTHO05D007039 5.7e-61 238.4 180 67.2
Sed0020079 Sechium edule HOM05D000032 ORTHO05D007039 5.7e-61 238.4 200 64.0
ECA248G0200 Erigeron canadensis HOM05D000032 ORTHO05D007039 1.7e-60 236.9 177 66.7
FAN27G2140 Fragaria x ananassa HOM05D000032 ORTHO05D007039 2.8e-60 236.1 212 65.1
MELO3C017528.2 Cucumis melo HOM05D000032 ORTHO05D007039 6.3e-60 235.0 196 62.8
FvH4_2g15160 Fragaria vesca HOM05D000032 ORTHO05D007039 1.4e-59 233.8 205 65.4
Nitab4.5_0003942g0070 Nicotiana tabacum HOM05D000032 ORTHO05D007039 2.4e-59 233.0 203 63.5
CsaV3_1G045380 Cucumis sativus L. HOM05D000032 ORTHO05D007039 3.1e-59 232.6 198 62.1
FAN24G0655 Fragaria x ananassa HOM05D000032 ORTHO05D007039 3.1e-59 232.6 205 64.9
PGR042G3397 Punica granatum HOM05D000032 ORTHO05D007039 1.2e-58 230.7 200 65.0
unitig_52.g17544 Utricularia gibba HOM05D000032 ORTHO05D007039 3.5e-58 229.2 168 67.3
ATR0584G252 Amborella trichopoda HOM05D000032 ORTHO05D007039 1.0e-57 227.6 197 66.0
THA.LOC104812064 Tarenaya hassleriana HOM05D000032 ORTHO05D007039 1.3e-57 227.3 202 61.9
ClCG10G008660 Citrullus lanatus HOM05D000032 ORTHO05D007039 3.8e-57 225.7 177 63.8
FAN15G1637 Fragaria x ananassa HOM05D000032 ORTHO05D007039 1.9e-56 223.4 205 63.4
AT1G77030 Arabidopsis thaliana HOM05D000032 ORTHO05D007039 4.2e-56 222.2 188 63.8
Aa31LG4G7090 Aethionema arabicum HOM05D000032 ORTHO05D007039 5.5e-56 221.9 198 62.1
CDE05G3385 Ceratophyllum demersum HOM05D000032 ORTHO05D007039 7.2e-56 221.5 198 59.6
CDE11G0771 Ceratophyllum demersum HOM05D000032 ORTHO05D007039 1.6e-55 220.3 199 59.3
EL10Ac1g01414 Beta vulgaris HOM05D000032 ORTHO05D007039 4.7e-55 218.8 198 60.1
SHI09252 Sapria himalayana HOM05D000032 ORTHO05D007039 1.0e-54 217.6 185 60.0
C06p31480 Brassica napus HOM05D000032 ORTHO05D007039 4.0e-54 215.7 220 56.8
BcaB02g07093 Brassica carinata HOM05D000032 ORTHO05D007039 5.2e-54 215.3 220 56.8
BolC6t38280H Brassica oleracea HOM05D000032 ORTHO05D007039 5.2e-54 215.3 220 56.8
BraA07t30454Z Brassica rapa HOM05D000032 ORTHO05D007039 5.2e-54 215.3 220 56.8
CARHR070560 Cardamine hirsuta HOM05D000032 ORTHO05D007039 6.7e-54 214.9 206 61.2
BcaNung04681 Brassica carinata HOM05D000032 ORTHO05D007039 2.0e-53 213.4 234 55.1
A07p28090 Brassica napus HOM05D000032 ORTHO05D007039 2.0e-53 213.4 195 61.5
AL2G37210 Arabidopsis lyrata HOM05D000032 ORTHO05D007039 2.2e-52 209.9 175 64.0
HPP92_015492 Vanilla planifolia HOM05D000032 ORTHO05D007039 1.8e-51 206.8 198 57.6
Carub.0002s2395 Capsella rubella HOM05D000032 ORTHO05D007039 2.4e-51 206.5 172 65.7
AUR62013465 Chenopodium quinoa HOM05D000032 ORTHO05D007039 3.1e-51 206.1 178 64.0
Thhalv10018119m.g Eutrema salsugineum HOM05D000032 ORTHO05D007039 1.6e-50 203.8 173 63.0
Sp5g32190 Schrenkiella parvula HOM05D000032 ORTHO05D007039 4.5e-50 202.2 208 56.7
BcaB02g07095 Brassica carinata HOM05D000032 ORTHO05D007039 1.7e-49 200.3 177 62.7
AUR62007669 Chenopodium quinoa HOM05D000032 ORTHO05D007039 3.8e-49 199.1 177 64.4
BcaNung04684 Brassica carinata HOM05D000032 ORTHO05D007039 2.1e-47 193.4 216 54.2
Glyma.16G116400 Glycine max HOM05D000032 ORTHO05D007039 3.6e-47 192.6 153 64.7
Nitab4.5_0003348g0030 Nicotiana tabacum HOM05D000032 ORTHO05D007039 1.4e-46 190.7 153 65.4
Os08g0416100 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007039 1.7e-44 183.7 218 50.5
Zm00001eb179010 Zea mays HOM05D000032 ORTHO05D007039 1.7e-44 183.7 201 53.2
CANSAT80G2781 Cannabis sativa HOM05D000032 ORTHO05D007039 1.8e-43 180.3 120 71.7
Pp3c14_6810 Physcomitrium patens HOM05D000032 ORTHO05D007039 7.2e-40 168.3 177 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4830 Anthoceros agrestis HOM05D000032 ORTHO05D007039 1.5e-37 160.6 198 45.5
Mapoly0165s0019 Marchantia polymorpha HOM05D000032 ORTHO05D007039 4.4e-37 159.1 183 46.4
SMO361G0600 Selaginella moellendorffii HOM05D000032 ORTHO05D007039 5.7e-37 158.7 204 46.6
SMO361G0757 Selaginella moellendorffii HOM05D000032 ORTHO05D007039 1.7e-36 157.1 218 45.0
SEGI_17341 Sequoiadendron giganteum HOM05D000032 ORTHO05D007039 7.8e-34 148.3 163 55.8
Thecc.08G140000 Theobroma cacao HOM05D000032 ORTHO05D007039 1.3e-20 104.4 93 64.5
CBR_g757 Chara braunii HOM05D000032 ORTHO05D007039 1.1e-19 101.3 219 32.9
PRCOL_00001178 Prasinoderma coloniale HOM05D000032 ORTHO05D007039 2.0e-13 80.5 209 31.6
C05p33370 Brassica napus HOM05D019533 ORTHO05D020080 2.2e-12 77.0 83 57.8
BolC5t32062H Brassica oleracea HOM05D019533 ORTHO05D020080 2.2e-12 77.0 83 57.8
Sc15g0007470 Simmondsia chinensis HOM05D000032 ORTHO05D007039 1.4e-11 74.3 52 65.4
BolC5t30359H Brassica oleracea HOM05D001251 ORTHO05D020080 7.1e-11 72.0 95 48.4
Cre12.g513701 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D007039 6.6e-09 65.5 77 42.9
SGA_v2.0_scaffold19G08689 Striga asiatica HOM05D001345 ORTHO05D001190 3.6e-07 59.7 36 77.8


User provided reference genes

Program Settings