Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035499 Camellia sinensis var. sinensis HOM05D000545 ORTHO05D000539 3.3e-80 301.6 146 100.0
CSS0005613 Camellia sinensis var. sinensis HOM05D000545 ORTHO05D000539 2.7e-58 228.8 134 85.8
Actinidia39090 Actinidia chinensis HOM05D000545 ORTHO05D000539 3.1e-38 162.2 137 62.8
Dinv37878 Davidia involucrata HOM05D000545 ORTHO05D000539 1.5e-37 159.8 134 63.4
Rhsim08G0237000 Rhododendron simsii HOM05D000545 ORTHO05D000539 2.0e-37 159.5 152 55.3
vmacro22214 Vaccinium macrocarpon HOM05D000545 ORTHO05D000539 2.2e-36 156.0 165 53.3
Hma1.2p1_0291F.1_g115250 Hydrangea macrophylla HOM05D000545 ORTHO05D000539 1.2e-34 150.2 134 59.7
Dinv04022 Davidia involucrata HOM05D000545 ORTHO05D000539 1.0e-33 147.1 134 60.4
Actinidia32173 Actinidia chinensis HOM05D000545 ORTHO05D000539 3.7e-31 138.7 137 56.2
vmacro17049 Vaccinium macrocarpon HOM05D000545 ORTHO05D000539 6.3e-31 137.9 138 55.8
Rhsim12G0208700 Rhododendron simsii HOM05D000545 ORTHO05D000539 3.1e-30 135.6 134 56.0
TAR636G3070 Trochodendron aralioides HOM05D000545 ORTHO05D000539 3.8e-28 128.6 134 51.5
CiPaw.01G221100 Carya illinoinensis HOM05D000545 ORTHO05D000539 2.7e-26 122.5 130 53.8
Duzib160G0266 Durio zibethinus HOM05D000545 ORTHO05D000539 5.7e-24 114.8 131 51.1
Duzib192G0141 Durio zibethinus HOM05D000545 ORTHO05D000539 9.7e-24 114.0 131 53.4
Thecc.06G117600 Theobroma cacao HOM05D000545 ORTHO05D000539 3.1e-22 109.0 130 50.8
CiPaw.02G137100 Carya illinoinensis HOM05D000545 ORTHO05D000539 7.0e-22 107.8 135 48.1
COL.COLO4_30783 Corchorus olitorius HOM05D000545 ORTHO05D000539 9.1e-22 107.5 130 52.3
TAR624G0895 Trochodendron aralioides HOM05D000545 ORTHO05D000539 2.6e-21 105.9 134 46.3
Lj5C39T4 Lonicera japonica HOM05D000545 ORTHO05D000539 3.4e-21 105.5 134 50.0
QL05p008693 Quercus lobata HOM05D000545 ORTHO05D000539 3.4e-21 105.5 134 44.8
Gohir.A05G137400 Gossypium hirsutum HOM05D000545 ORTHO05D000539 5.9e-21 104.8 130 50.0
Prupe.3G043900 Prunus persica HOM05D000545 ORTHO05D000539 1.0e-20 104.0 134 48.5
Gorai.011G057600 Gossypium raimondii HOM05D000545 ORTHO05D000539 1.3e-20 103.6 137 48.2
Duzib235G0161 Durio zibethinus HOM05D000545 ORTHO05D000539 2.2e-20 102.8 137 47.4
Gorai.009G143800 Gossypium raimondii HOM05D000545 ORTHO05D000539 5.0e-20 101.7 131 49.6
TAR383G0575 Trochodendron aralioides HOM05D000545 ORTHO05D000539 6.5e-20 101.3 134 47.0
Gohir.A10G052400 Gossypium hirsutum HOM05D000545 ORTHO05D000539 8.5e-20 100.9 130 49.2
Lsat_1_v5_gn_1_37160 Lactuca sativa HOM05D000545 ORTHO05D000539 8.5e-20 100.9 135 49.6
Gohir.D04G009100 Gossypium hirsutum HOM05D000545 ORTHO05D000539 1.9e-19 99.8 130 50.0
RcHm_v2.0_Chr2g0144701 Rosa chinensis HOM05D000545 ORTHO05D000539 3.2e-19 99.0 134 44.0
Atru.chr1.3899 Acer truncatum HOM05D000545 ORTHO05D000539 2.7e-18 95.9 135 44.4
Gorai.012G010900 Gossypium raimondii HOM05D000545 ORTHO05D000539 2.7e-18 95.9 131 49.6
Nn6g35581 Nelumbo nucifera HOM05D000545 ORTHO05D000539 3.6e-18 95.5 134 45.5
TAR626G0411 Trochodendron aralioides HOM05D000545 ORTHO05D000539 3.6e-18 95.5 123 45.5
CANSAT56G3172 Cannabis sativa HOM05D000545 ORTHO05D000539 6.1e-18 94.7 136 47.1
Gohir.A05G406500 Gossypium hirsutum HOM05D000545 ORTHO05D000539 2.3e-17 92.8 127 48.8
Manes.04G142600 Manihot esculenta HOM05D000545 ORTHO05D000539 3.0e-17 92.4 134 42.5
Manes.11G022300 Manihot esculenta HOM05D000545 ORTHO05D000539 3.0e-17 92.4 134 44.8
FvH4_6g34360 Fragaria vesca HOM05D000545 ORTHO05D000539 6.7e-17 91.3 128 41.4
Ciclev10026020m.g Citrus clementina HOM05D000545 ORTHO05D000539 1.1e-16 90.5 136 41.9
PSO210G1397 Papaver somniferum HOM05D000545 ORTHO05D000539 1.1e-16 90.5 125 43.2
Cpa.g.sc25.96 Carica papaya HOM05D000545 ORTHO05D000539 1.5e-16 90.1 130 47.7
MD09G1186200 Malus domestica HOM05D000545 ORTHO05D000539 2.0e-16 89.7 126 46.8
PSO210G7033 Papaver somniferum HOM05D000545 ORTHO05D000539 2.6e-16 89.4 125 43.2
ECA247G3873 Erigeron canadensis HOM05D000545 ORTHO05D000539 4.4e-16 88.6 133 45.1
Dinv25584 Davidia involucrata HOM05D000545 ORTHO05D000539 5.7e-16 88.2 134 38.8
FAN05G5580 Fragaria x ananassa HOM05D000545 ORTHO05D000539 7.4e-16 87.8 128 39.8
GSVIVG01015120001 Vitis vinifera HOM05D000545 ORTHO05D000539 7.4e-16 87.8 134 40.3
Gohir.D05G139400 Gossypium hirsutum HOM05D000545 ORTHO05D000539 2.8e-15 85.9 117 48.7
QL02p061158 Quercus lobata HOM05D000545 ORTHO05D000539 6.3e-15 84.7 134 38.8
QL02p061167 Quercus lobata HOM05D000545 ORTHO05D000539 6.3e-15 84.7 134 38.8
QL02p061202 Quercus lobata HOM05D000545 ORTHO05D000539 6.3e-15 84.7 134 38.8
QL02p061207 Quercus lobata HOM05D000545 ORTHO05D000539 6.3e-15 84.7 134 38.8
Hund05748 Selenicereus undatus HOM05D000545 ORTHO05D000539 6.3e-15 84.7 135 37.8
FAN14G4097 Fragaria x ananassa HOM05D000545 ORTHO05D000539 1.1e-14 84.0 115 41.7
Ca_05016_v3 Cicer arietinum L. HOM05D000545 ORTHO05D000539 1.4e-14 83.6 133 45.1
AUR62001502 Chenopodium quinoa HOM05D000545 ORTHO05D000539 7.0e-14 81.3 134 38.1
FAN09G3653 Fragaria x ananassa HOM05D000545 ORTHO05D000539 7.0e-14 81.3 128 39.8
MBI13_g29629_MAGBIO Magnolia biondii HOM05D000545 ORTHO05D000539 7.0e-14 81.3 134 39.6
PSO421G0626 Papaver somniferum HOM05D000545 ORTHO05D000539 9.1e-14 80.9 132 37.1
AUR62009868 Chenopodium quinoa HOM05D000545 ORTHO05D000539 1.6e-13 80.1 134 36.6
EL10Ac7g16393 Beta vulgaris HOM05D000545 ORTHO05D000539 4.5e-13 78.6 134 36.6
Cc04_g01480 Coffea canephora HOM05D000545 ORTHO05D000539 5.9e-13 78.2 123 43.1
PSO063G1663 Papaver somniferum HOM05D000545 ORTHO05D000539 1.0e-12 77.4 132 36.4
vmacro06313 Vaccinium macrocarpon HOM05D000545 ORTHO05D000539 1.3e-12 77.0 145 37.9
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 1.7e-12 76.6 132 36.4
Dinv42365 Davidia involucrata HOM05D000545 ORTHO05D000539 2.9e-12 75.9 134 35.1
DCAR_007632 Daucus carota HOM05D000545 ORTHO05D000539 5.0e-12 75.1 149 36.9
Gohir.D10G054100 Gossypium hirsutum HOM05D000545 ORTHO05D000539 8.5e-12 74.3 101 48.5
CSS0004932 Camellia sinensis var. sinensis HOM05D000545 ORTHO05D000539 1.5e-11 73.6 122 39.3
Nitab4.5_0000189g0260 Nicotiana tabacum HOM05D000545 ORTHO05D000539 1.5e-11 73.6 121 42.1
CiPaw.03G210300 Carya illinoinensis HOM05D000545 ORTHO05D000539 3.2e-11 72.4 132 34.8
Glyma.07G036200 Glycine max HOM05D000545 ORTHO05D000539 3.2e-11 72.4 134 40.3
Ah.08g216620 Amaranthus hybridus HOM05D000545 ORTHO05D000539 4.2e-11 72.0 134 34.3
TWI34G0738 Tripterygium wilfordii HOM05D000545 ORTHO05D000539 5.5e-11 71.6 135 34.8
Medtr8g019540 Medicago truncatula HOM05D000545 ORTHO05D000539 9.4e-11 70.9 131 42.0
Eucgr.C00842 Eucalyptus grandis HOM05D000545 ORTHO05D000539 1.2e-10 70.5 133 35.3
Thecc.09G081400 Theobroma cacao HOM05D000545 ORTHO05D000539 1.2e-10 70.5 134 34.3
Nitab4.5_0000549g0010 Nicotiana tabacum HOM05D000545 ORTHO05D000539 1.6e-10 70.1 121 41.3
Potri.006G145100 Populus trichocarpa HOM05D000545 ORTHO05D000539 1.6e-10 70.1 132 37.1
Actinidia39688 Actinidia chinensis HOM05D000545 ORTHO05D000539 2.1e-10 69.7 134 34.3
PGR119G0546 Punica granatum HOM05D000545 ORTHO05D000539 2.1e-10 69.7 131 39.7
THA.LOC104822660 Tarenaya hassleriana HOM05D000545 ORTHO05D000539 2.7e-10 69.3 135 38.5
Potri.018G064700 Populus trichocarpa HOM05D000545 ORTHO05D000539 4.7e-10 68.6 129 38.0
PGSC0003DMG400002484 Solanum tuberosum HOM05D000545 ORTHO05D000539 6.1e-10 68.2 126 39.7
Aqoxy7G01100 Aquilegia oxysepala HOM05D000545 ORTHO05D000539 1.0e-09 67.4 134 34.3
Lj7C682T15 Lonicera japonica HOM05D000545 ORTHO05D000539 1.4e-09 67.0 134 36.6
THA.LOC104815623 Tarenaya hassleriana HOM05D000545 ORTHO05D000539 1.4e-09 67.0 137 38.0
MBI19_g17444_MAGBIO Magnolia biondii HOM05D000545 ORTHO05D000539 2.3e-09 66.2 236 26.7
Sabra18G0057300 Salix brachista HOM05D000545 ORTHO05D000539 2.3e-09 66.2 129 35.7
DCAR_026393 Daucus carota HOM05D000545 ORTHO05D000539 3.0e-09 65.9 135 36.3
Phvul.010G133300 Phaseolus vulgaris HOM05D000545 ORTHO05D000539 3.0e-09 65.9 133 39.1
CDE05G3107 Ceratophyllum demersum HOM05D000545 ORTHO05D000539 4.0e-09 65.5 123 35.0
Sabra06G0114700 Salix brachista HOM05D000545 ORTHO05D000539 4.0e-09 65.5 125 37.6
Atru.chr7.1659 Acer truncatum HOM05D000545 ORTHO05D000539 5.2e-09 65.1 133 33.8
Lj3g0016238 Lotus japonicus HOM05D000545 ORTHO05D000539 5.2e-09 65.1 133 36.8
TWI79G1736 Tripterygium wilfordii HOM05D000545 ORTHO05D000539 5.2e-09 65.1 129 36.4
GSVIVG01016790001 Vitis vinifera HOM05D000545 ORTHO05D000539 5.2e-09 65.1 127 40.9
MD02G1086200 Malus domestica HOM05D000545 ORTHO05D000539 6.7e-09 64.7 143 33.6
Sp5g27870 Schrenkiella parvula HOM05D000545 ORTHO05D000539 8.8e-09 64.3 130 40.8
AUR62029002 Chenopodium quinoa HOM05D000545 ORTHO05D000539 2.0e-08 63.2 149 29.5
AT1G72830 Arabidopsis thaliana HOM05D000545 ORTHO05D000539 2.6e-08 62.8 134 38.8
Peaxi162Scf00038g01819 Petunia axillaris HOM05D000545 ORTHO05D000539 2.6e-08 62.8 125 38.4
Sc18g0002380 Simmondsia chinensis HOM05D000545 ORTHO05D000539 2.6e-08 62.8 126 34.1
BolC6t39749H Brassica oleracea HOM05D000545 ORTHO05D000539 3.3e-08 62.4 129 38.0
FAN02G0738 Fragaria x ananassa HOM05D000545 ORTHO05D000539 3.3e-08 62.4 99 36.4
Manes.16G097900 Manihot esculenta HOM05D000545 ORTHO05D000539 3.3e-08 62.4 134 32.8
VMungo0331G1186 Vigna mungo HOM05D000545 ORTHO05D000539 3.3e-08 62.4 128 39.8
BcaB05g24780 Brassica carinata HOM05D000545 ORTHO05D000539 4.4e-08 62.0 131 38.9
CDE11G0745 Ceratophyllum demersum HOM05D000545 ORTHO05D000539 4.4e-08 62.0 135 34.1
Oeu051317.2 Olea europaea HOM05D000545 ORTHO05D000539 4.4e-08 62.0 131 33.6
TWI32G0309 Tripterygium wilfordii HOM05D000545 ORTHO05D000539 5.7e-08 61.6 134 29.9
EL10Ac8g19140 Beta vulgaris HOM05D000545 ORTHO05D000539 7.5e-08 61.2 130 30.0
MD15G1213400 Malus domestica HOM05D000545 ORTHO05D000539 7.5e-08 61.2 140 32.9
THA.LOC104813949 Tarenaya hassleriana HOM05D000545 ORTHO05D000539 7.5e-08 61.2 129 40.3
CAN.G547.11 Capsicum annuum HOM05D000545 ORTHO05D014546 1.7e-07 60.1 129 33.3
AL2G32520 Arabidopsis lyrata HOM05D000545 ORTHO05D000539 2.8e-07 59.3 117 39.3
Duzib150G0566 Durio zibethinus HOM05D000545 ORTHO05D000539 3.7e-07 58.9 134 29.1
Glyma.16G005500 Glycine max HOM05D000545 ORTHO05D000539 3.7e-07 58.9 128 39.1
Aa31LG4G3170 Aethionema arabicum HOM05D000545 ORTHO05D000539 6.3e-07 58.2 118 39.8
A07p38940 Brassica napus HOM05D000545 ORTHO05D000539 6.3e-07 58.2 129 36.4
BolC2t09084H Brassica oleracea HOM05D000545 ORTHO05D000539 6.3e-07 58.2 138 36.2
Cc08_g01380 Coffea canephora HOM05D000545 ORTHO05D000539 6.3e-07 58.2 130 31.5
Sc08g0008730 Simmondsia chinensis HOM05D000545 ORTHO05D000539 6.3e-07 58.2 131 32.1
Solyc08g062210.3 Solanum lycopersicum HOM05D000545 ORTHO05D000539 6.3e-07 58.2 130 33.1
C06p47110 Brassica napus HOM05D000545 ORTHO05D000539 8.2e-07 57.8 130 36.2
HanXRQChr04g0094841 Helianthus annuus HOM05D000545 ORTHO05D000539 8.2e-07 57.8 142 34.5
CARHR065750 Cardamine hirsuta HOM05D000545 ORTHO05D000539 1.1e-06 57.4 120 37.5
Aa31LG7G2370 Aethionema arabicum HOM05D000545 ORTHO05D000539 1.4e-06 57.0 131 37.4
ATR0598G331 Amborella trichopoda HOM05D000545 ORTHO05D000539 1.4e-06 57.0 61 41.0
BraA02t06869Z Brassica rapa HOM05D000545 ORTHO05D000539 1.4e-06 57.0 138 35.5
QL02p061234 Quercus lobata HOM05D000545 ORTHO05D000539 1.4e-06 57.0 149 30.2
Sopen03g040760 Solanum pennellii HOM05D000545 ORTHO05D000539 1.4e-06 57.0 126 35.7
Sopen08g017820 Solanum pennellii HOM05D000545 ORTHO05D000539 1.4e-06 57.0 129 32.6
BcaC03g15423 Brassica carinata HOM05D000545 ORTHO05D000539 1.8e-06 56.6 138 36.2
C02p30350 Brassica napus HOM05D000545 ORTHO05D000539 1.8e-06 56.6 138 36.2
Prupe.7G203500 Prunus persica HOM05D000545 ORTHO05D000539 1.8e-06 56.6 136 34.6
BcaC08g46723 Brassica carinata HOM05D000545 ORTHO05D000539 2.4e-06 56.2 130 35.4
BolC6t39751H Brassica oleracea HOM05D000545 ORTHO05D000539 2.4e-06 56.2 130 35.4
CAN.G6.11 Capsicum annuum HOM05D000545 ORTHO05D000539 3.1e-06 55.8 130 33.1
Thhalv10018869m.g Eutrema salsugineum HOM05D000545 ORTHO05D000539 3.1e-06 55.8 129 36.4
MSTRG.1689 Avicennia marina HOM05D000545 ORTHO05D000539 5.3e-06 55.1 128 31.2
Glyma.15G027400 Glycine max HOM05D000545 ORTHO05D000539 5.3e-06 55.1 129 34.1
ATR0829G142 Amborella trichopoda HOM05D000545 ORTHO05D000539 7.0e-06 54.7 141 31.2
BcaB03g15021 Brassica carinata HOM05D000005 ORTHO05D000539 7.0e-06 54.7 129 35.7
Nitab4.5_0003874g0020 Nicotiana tabacum HOM05D000545 ORTHO05D000539 7.0e-06 54.7 121 30.6
CAN.G862.24 Capsicum annuum HOM05D000545 ORTHO05D000539 9.1e-06 54.3 99 38.4
Gohir.A13G192100 Gossypium hirsutum HOM05D000545 ORTHO05D000539 9.1e-06 54.3 134 26.9


User provided reference genes

Program Settings