Gene: Solyc08g062210.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc08g062210.3
- Transcript Identifier Solyc08g062210.3.1
- Gene Type Coding gene
- Location SL4.0ch08 : 48860283-48869028 : positive
Gene Family Information
- ID HOM05D000545
- #Genes/#Species 1002/98
- Phylogenetic origin
- ID ORTHO05D000539
- #Genes/#Species 801/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc08g062210.3.1
- uniprot A0A3Q7HMA4
- gene_id Solyc08g062210
Descriptions
- Description Nuclear transcription factor Y subunit A-1 (AHRD V3.3 *** A0A1U8DRR5_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006357 | IBA | GOA Database | regulation of transcription by RNA polymerase II | |
| GO:0009414 | ISO | PLAZA Integrative Orthology | response to water deprivation | AT1G54160 |
| GO:0009785 | ISO | PLAZA Integrative Orthology | blue light signaling pathway | AT1G54160 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT3G14020 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT3G14020 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT1G54160 |
| GO:0009738 | ISO | PLAZA Integrative Orthology | abscisic acid-activated signaling pathway | AT1G54160 |
| GO:0010262 | ISO | PLAZA Integrative Orthology | somatic embryogenesis | AT3G14020 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G54160 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G14020 |
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0000978 | IBA | GOA Database | RNA polymerase II cis-regulatory region sequence-specific DNA binding | |
| GO:0000981 | IBA | GOA Database | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016602 | IEA | GOA Database | CCAAT-binding factor complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001289 | Nuclear transcription factor Y subunit A |
| Mapman id | Description |
|---|---|
| 15.5.49.1 | RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YA |