Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.8e-179 631.3 311 100.0
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 3.8e-78 295.8 237 65.4
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 8.0e-76 288.1 250 64.4
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 1.0e-75 287.7 252 63.5
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.3e-75 286.6 274 58.4
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 5.2e-75 285.4 252 62.7
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 2.6e-74 283.1 258 60.1
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.7e-73 280.4 239 60.7
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 3.7e-73 279.3 250 60.8
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 8.3e-73 278.1 276 56.9
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.4e-72 277.3 232 63.8
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 5.4e-72 275.4 235 63.4
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 7.0e-72 275.0 252 61.5
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.5e-71 272.7 251 61.4
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 4.5e-71 272.3 237 62.4
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 5.9e-71 271.9 235 62.6
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 7.7e-71 271.6 251 61.4
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 7.7e-71 271.6 251 61.4
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 7.7e-71 271.6 233 63.1
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 1.0e-70 271.2 235 62.1
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 3.8e-70 269.2 235 62.1
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 3.8e-70 269.2 235 63.0
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 2.5e-69 266.5 232 63.4
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 3.3e-69 266.2 235 60.9
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 4.2e-69 265.8 237 60.3
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 4.2e-69 265.8 235 61.7
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 2.1e-68 263.5 235 60.4
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 2.8e-68 263.1 228 59.2
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 4.7e-68 262.3 256 56.2
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 8.0e-68 261.5 245 60.0
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.0e-67 261.2 234 62.4
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 2.3e-67 260.0 235 59.6
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 3.0e-67 259.6 239 61.9
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 3.0e-67 259.6 230 61.3
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 4.0e-67 259.2 247 59.5
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 4.0e-67 259.2 230 61.3
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.0e-67 259.2 230 61.3
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 6.8e-67 258.5 254 56.3
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.5e-66 257.3 237 59.1
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 2.0e-66 256.9 231 61.5
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 2.0e-66 256.9 235 60.0
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.0e-66 256.9 222 60.8
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 2.6e-66 256.5 235 61.7
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.6e-66 256.5 222 60.8
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 7.5e-66 255.0 235 57.9
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 7.5e-66 255.0 235 59.1
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 7.5e-66 255.0 235 58.7
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 7.5e-66 255.0 238 57.6
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 9.8e-66 254.6 234 60.3
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 1.3e-65 254.2 231 61.0
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.3e-65 254.2 246 58.5
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.3e-65 254.2 239 60.3
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.3e-65 254.2 274 51.8
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 1.7e-65 253.8 235 56.6
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.2e-65 253.4 225 60.4
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 2.2e-65 253.4 237 59.5
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.2e-65 253.4 238 57.6
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.2e-65 253.4 235 60.4
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 2.2e-65 253.4 252 55.2
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 3.7e-65 252.7 222 62.6
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 4.9e-65 252.3 252 54.8
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 6.3e-65 251.9 257 56.8
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 6.3e-65 251.9 232 56.9
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 6.3e-65 251.9 252 54.4
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 1.1e-64 251.1 232 56.9
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.1e-64 251.1 238 57.6
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.4e-64 250.8 232 57.3
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 1.8e-64 250.4 222 59.5
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.8e-64 250.4 222 59.5
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 2.4e-64 250.0 254 54.3
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 7.0e-64 248.4 232 56.9
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.2e-63 247.7 232 56.9
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 1.6e-63 247.3 232 56.0
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.6e-63 247.3 232 56.0
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.6e-63 247.3 232 56.5
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 2.7e-63 246.5 233 58.4
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 4.6e-63 245.7 235 57.0
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.9e-63 245.4 230 60.0
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 1.0e-62 244.6 234 57.7
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.7e-62 243.8 234 57.3
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.3e-62 243.4 230 59.6
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 2.3e-62 243.4 226 59.3
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 2.9e-62 243.0 226 59.3
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 5.0e-62 242.3 232 56.5
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 5.0e-62 242.3 231 56.3
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.0e-62 242.3 230 59.6
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 3.3e-61 239.6 230 57.0
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 4.3e-61 239.2 234 57.3
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 7.3e-61 238.4 230 57.0
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 7.3e-61 238.4 237 54.9
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 1.6e-60 237.3 221 59.3
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.6e-60 237.3 299 48.5
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 2.1e-60 236.9 231 54.5
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 2.8e-60 236.5 231 55.4
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 2.8e-60 236.5 230 57.4
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 3.6e-60 236.1 231 53.7
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 4.7e-60 235.7 232 56.5
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 4.7e-60 235.7 232 56.5
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 4.0e-59 232.6 222 56.3
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 8.9e-59 231.5 214 57.9
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 8.9e-59 231.5 234 52.6
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 5.8e-58 228.8 232 51.7
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 7.5e-58 228.4 233 54.1
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.7e-57 227.3 234 51.3
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.7e-57 227.3 250 50.8
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 1.1e-56 224.6 132 81.8
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.2e-55 221.1 228 54.8
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 4.6e-55 219.2 231 51.9
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 3.9e-54 216.1 189 63.5
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.5e-53 213.4 225 52.4
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 3.3e-53 213.0 128 81.2
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.2e-52 211.1 151 66.2
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 8.1e-52 208.4 232 53.0
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 8.1e-52 208.4 232 53.9
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 1.2e-44 184.5 234 48.7
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 2.8e-44 183.3 124 69.4
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 3.6e-44 183.0 116 73.3
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 2.2e-41 173.7 133 63.2
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.1e-40 171.4 223 47.1
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 9.2e-40 168.3 112 71.4
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 2.5e-37 160.2 225 44.0
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.6e-36 157.5 222 45.0
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 4.6e-31 139.4 194 44.8
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 3.2e-24 116.7 115 56.5
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 8.7e-22 108.6 73 71.2
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 3.4e-18 96.7 70 62.9
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 3.8e-17 93.2 51 82.4
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 2.1e-15 87.4 71 63.4
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 1.6e-12 77.8 115 38.3
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 3.7e-12 76.6 220 29.1
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 1.0e-09 68.6 110 33.6
Oeu001605.1 Olea europaea HOM05D003481 ORTHO05D004001 1.0e-09 68.6 59 52.5
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 5.1e-06 56.2 47 57.4
vmacro16031 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 5.1e-06 56.2 44 65.9


User provided reference genes

Program Settings