Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.4e-85 319.7 176 100.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-61 240.4 231 66.7
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-61 240.4 231 66.7
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 4.1e-61 238.4 231 67.5
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 4.5e-60 235.0 231 64.5
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.7e-59 233.0 231 64.5
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 5.6e-58 228.0 231 62.8
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 7.3e-58 227.6 233 65.2
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 9.5e-58 227.3 231 64.5
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 2.1e-57 226.1 246 61.0
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.8e-57 225.7 231 63.2
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.8e-57 225.7 231 64.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.1e-57 224.6 235 63.4
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 6.1e-57 224.6 231 63.2
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 6.1e-57 224.6 231 61.9
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.4e-56 223.4 231 62.8
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 3.0e-56 222.2 231 63.2
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.0e-56 222.2 235 60.0
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 5.2e-56 221.5 231 62.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 5.2e-56 221.5 231 62.3
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.2e-56 221.5 231 61.0
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 5.2e-56 221.5 231 60.6
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 8.9e-56 220.7 232 63.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.5e-55 219.9 231 60.6
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.5e-55 219.9 231 60.6
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.5e-55 219.9 231 61.5
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.5e-55 219.9 232 62.5
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 2.0e-55 219.5 231 61.9
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.0e-55 219.5 232 62.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.6e-55 219.2 231 62.8
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 4.4e-55 218.4 232 60.3
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 5.7e-55 218.0 231 59.3
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 5.7e-55 218.0 226 63.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 5.7e-55 218.0 231 62.3
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 5.7e-55 218.0 230 61.7
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 7.5e-55 217.6 232 59.9
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 9.8e-55 217.2 232 59.9
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 9.8e-55 217.2 232 59.9
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 9.8e-55 217.2 231 61.5
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-54 216.9 232 59.9
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.3e-54 216.9 232 59.9
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.3e-54 216.9 232 59.5
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.7e-54 216.5 231 61.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.7e-54 216.5 231 61.0
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.7e-54 216.5 231 60.2
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.9e-54 215.7 232 59.5
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.7e-54 215.3 231 61.5
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.7e-54 215.3 230 62.2
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 4.9e-54 214.9 231 59.7
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 4.9e-54 214.9 232 59.5
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 4.9e-54 214.9 231 61.5
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 6.4e-54 214.5 230 61.3
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.1e-53 213.8 231 61.9
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-53 213.4 232 59.9
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.4e-53 213.4 232 60.3
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.4e-53 213.4 234 61.1
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.4e-53 213.4 218 58.7
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.8e-53 213.0 231 60.6
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.4e-53 212.6 231 59.3
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 3.2e-53 212.2 231 61.5
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.1e-53 211.8 233 60.1
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 4.1e-53 211.8 232 61.2
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 5.4e-53 211.5 232 58.6
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 5.4e-53 211.5 232 58.6
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 5.4e-53 211.5 231 60.6
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-52 210.3 233 59.2
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.2e-52 210.3 233 59.2
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-52 209.9 230 58.3
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-52 209.9 218 61.5
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.0e-52 209.5 234 60.3
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 2.7e-52 209.1 233 61.4
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 3.5e-52 208.8 231 61.0
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 3.5e-52 208.8 226 56.6
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 4.6e-52 208.4 226 61.1
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 4.6e-52 208.4 233 57.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.0e-51 207.2 231 61.0
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.0e-51 207.2 233 59.7
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.0e-51 207.2 234 59.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.0e-51 207.2 233 59.7
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.0e-51 207.2 233 57.9
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.0e-51 207.2 222 55.4
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.7e-51 206.5 223 61.0
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.7e-51 206.5 233 60.1
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 3.0e-51 205.7 229 59.4
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 3.0e-51 205.7 231 60.2
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 5.0e-51 204.9 236 58.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 6.6e-51 204.5 231 59.3
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 8.6e-51 204.1 234 56.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.1e-50 203.8 226 59.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.1e-50 203.8 215 56.3
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.5e-50 202.6 244 57.8
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.3e-50 202.2 236 58.9
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 9.5e-50 200.7 230 57.8
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.2e-49 200.3 233 57.5
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.2e-49 200.3 233 57.5
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.2e-49 200.3 235 59.1
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.6e-49 199.9 226 60.6
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.6e-49 198.7 233 58.4
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 4.7e-49 198.4 230 58.3
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 6.2e-49 198.0 231 58.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.1e-48 197.2 225 60.9
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.8e-48 196.4 226 57.5
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.3e-48 196.1 217 60.8
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 6.8e-48 194.5 233 57.1
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 6.8e-48 194.5 229 52.0
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.5e-47 193.4 237 57.0
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.6e-47 192.6 222 58.6
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 3.4e-47 192.2 213 54.0
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.4e-47 191.8 217 54.4
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.4e-47 191.8 210 59.5
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 7.5e-47 191.0 251 50.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.8e-47 190.7 234 57.7
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 9.8e-47 190.7 234 57.7
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.3e-46 190.3 230 56.5
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-46 189.9 187 70.1
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 2.2e-46 189.5 219 58.9
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 2.9e-46 189.1 232 57.8
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.9e-46 189.1 217 53.5
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 3.7e-46 188.7 227 54.6
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.9e-46 188.3 233 57.1
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 6.4e-46 188.0 229 55.9
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 1.1e-45 187.2 225 56.9
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 5.4e-45 184.9 227 55.9
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.0e-45 184.5 285 44.6
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.6e-44 183.3 234 55.6
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.0e-44 181.4 223 55.6
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.0e-43 180.6 234 53.0
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.7e-43 179.9 231 53.2
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.7e-43 179.9 223 55.2
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 2.3e-43 179.5 231 53.2
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-42 177.2 223 54.7
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.6e-42 174.9 223 54.3
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.6e-41 172.2 222 54.1
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.8e-40 169.9 230 54.8
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.8e-40 169.9 218 56.4
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.0e-40 168.7 230 54.3
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 4.4e-39 165.2 274 47.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.7e-38 162.2 229 51.1
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 1.1e-37 160.6 233 50.6
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 2.6e-31 139.4 234 49.1
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.6e-31 137.9 216 43.1
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.1e-29 131.3 170 59.4
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 2.7e-28 129.4 233 45.5
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.7e-28 129.4 138 63.8
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 3.5e-28 129.0 241 45.2
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.0e-27 125.9 155 56.8
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 6.6e-27 124.8 163 54.0
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 8.7e-27 124.4 95 70.5
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.1e-26 124.0 93 71.0
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.9e-26 123.2 190 51.6
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.1e-25 119.8 96 67.7
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.8e-25 119.4 122 60.7
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 3.1e-24 115.9 160 54.4
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.5e-23 113.6 82 69.5
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 9.9e-23 110.9 121 54.5
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.7e-22 110.2 56 91.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 4.2e-21 105.5 178 47.8
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 9.3e-21 104.4 121 52.1
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.0e-20 101.7 162 47.5
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-18 97.4 88 61.4
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 3.3e-18 95.9 216 36.1
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.3e-17 94.0 92 57.6
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-17 94.0 108 51.9
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-17 93.6 108 50.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.6e-17 92.4 108 50.9
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.6e-17 92.4 77 63.6
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 8.1e-17 91.3 71 67.6
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.5e-15 85.5 121 48.8
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.8e-15 85.1 99 58.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 9.9e-15 84.3 190 38.4
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.8e-14 82.4 89 57.3
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.6e-12 75.5 73 57.5
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 7.6e-07 58.2 126 37.3


User provided reference genes

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