Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035200 Camellia sinensis var. sinensis HOM05D000545 ORTHO05D024729 5.5e-66 254.2 133 100.0
CSS0000821 Camellia sinensis var. sinensis HOM05D000545 ORTHO05D024729 3.1e-61 238.4 139 92.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 2.9e-27 125.6 81 75.3
Actinidia23975 Actinidia chinensis HOM05D000545 ORTHO05D000539 1.8e-24 116.3 85 70.6
Actinidia16336 Actinidia chinensis HOM05D000545 ORTHO05D000539 5.7e-23 111.3 85 68.2
vmacro04154 Vaccinium macrocarpon HOM05D000545 ORTHO05D000539 8.3e-22 107.5 85 64.7
Rhsim13G0220900 Rhododendron simsii HOM05D000545 ORTHO05D000539 3.8e-19 98.6 85 62.4
Hma1.2p1_0027F.1_g017100 Hydrangea macrophylla HOM05D000545 ORTHO05D024729 4.2e-18 95.1 71 71.8
DCAR_002074 Daucus carota HOM05D000545 ORTHO05D000539 2.3e-16 89.4 87 49.4
MSTRG.12467 Avicennia marina HOM05D000545 ORTHO05D000539 8.9e-16 87.4 77 57.1
Migut.N02320 Erythranthe guttata HOM05D000545 ORTHO05D000539 2.6e-15 85.9 84 51.2
Nitab4.5_0002741g0160 Nicotiana tabacum HOM05D000545 ORTHO05D000539 5.7e-15 84.7 78 59.0
Rhsim01G0192000 Rhododendron simsii HOM05D000545 ORTHO05D000539 5.7e-15 84.7 86 57.0
Peaxi162Scf00004g02521 Petunia axillaris HOM05D000545 ORTHO05D000539 1.3e-14 83.6 83 56.6
Nitab4.5_0001587g0040 Nicotiana tabacum HOM05D000545 ORTHO05D000539 2.2e-14 82.8 78 57.7
Thecc.09G234400 Theobroma cacao HOM05D000545 ORTHO05D000539 3.7e-14 82.0 90 51.1
COL.COLO4_07580 Corchorus olitorius HOM05D000545 ORTHO05D000539 1.1e-13 80.5 91 49.5
Ciclev10015808m.g Citrus clementina HOM05D000545 ORTHO05D000539 1.8e-13 79.7 91 48.4
PGSC0003DMG400007350 Solanum tuberosum HOM05D000545 ORTHO05D000539 1.8e-13 79.7 78 55.1
Manes.14G003100 Manihot esculenta HOM05D000545 ORTHO05D000539 2.4e-13 79.3 90 53.3
arahy.Tifrunner.gnm1.ann1.14IBSY Arachis hypogaea HOM05D000545 ORTHO05D000539 5.4e-13 78.2 93 44.1
arahy.Tifrunner.gnm1.ann1.P5AXXG Arachis hypogaea HOM05D000545 ORTHO05D000539 5.4e-13 78.2 93 44.1
Haze_23142 Corylus avellana HOM05D000545 ORTHO05D000539 5.4e-13 78.2 94 48.9
Duzib168G0819 Durio zibethinus HOM05D000545 ORTHO05D000539 1.6e-12 76.6 90 52.2
Sopen11g025440 Solanum pennellii HOM05D000545 ORTHO05D000539 2.0e-12 76.3 78 53.8
CAN.G494.5 Capsicum annuum HOM05D000545 ORTHO05D000539 2.7e-12 75.9 78 53.8
Solyc11g065700.2 Solanum lycopersicum HOM05D000545 ORTHO05D000539 2.7e-12 75.9 78 52.6
CiPaw.13G160600 Carya illinoinensis HOM05D000545 ORTHO05D000539 3.5e-12 75.5 92 46.7
CiPaw.14G118700 Carya illinoinensis HOM05D000545 ORTHO05D000539 3.5e-12 75.5 92 47.8
Duzib150G0130 Durio zibethinus HOM05D000545 ORTHO05D000539 4.5e-12 75.1 90 48.9
Peaxi162Scf00032g00323 Petunia axillaris HOM05D000545 ORTHO05D000539 4.5e-12 75.1 103 43.7
Nitab4.5_0000023g0710 Nicotiana tabacum HOM05D000545 ORTHO05D000539 5.9e-12 74.7 78 53.8
Oeu063324.1 Olea europaea HOM05D000545 ORTHO05D000539 1.3e-11 73.6 77 50.6
Glyma.18G071000 Glycine max HOM05D000545 ORTHO05D000539 2.3e-11 72.8 88 43.2
Phvul.008G283100 Phaseolus vulgaris HOM05D000545 ORTHO05D000539 2.3e-11 72.8 87 47.1
MSTRG.18429 Avicennia marina HOM05D000545 ORTHO05D000539 2.9e-11 72.4 87 49.4
Phvul.006G062200 Phaseolus vulgaris HOM05D000545 ORTHO05D000539 5.0e-11 71.6 88 42.0
Prupe.4G249900 Prunus persica HOM05D000545 ORTHO05D000539 6.6e-11 71.2 93 48.4
VMungo0540G2022 Vigna mungo HOM05D000545 ORTHO05D000539 6.6e-11 71.2 88 43.2
Glyma.02G303800 Glycine max HOM05D000545 ORTHO05D000539 1.1e-10 70.5 85 47.1
Gohir.A13G216700 Gossypium hirsutum HOM05D000545 ORTHO05D000539 1.5e-10 70.1 90 47.8
Lj6g0002522 Lotus japonicus HOM05D000545 ORTHO05D000539 1.5e-10 70.1 92 41.3
Glyma.08G335900 Glycine max HOM05D000545 ORTHO05D000539 1.9e-10 69.7 88 40.9
TAR633G2356 Trochodendron aralioides HOM05D000545 ORTHO05D000539 1.9e-10 69.7 91 44.0
Nitab4.5_0002786g0010 Nicotiana tabacum HOM05D000545 ORTHO05D024729 2.5e-10 69.3 78 52.6
MELO3C014590.2 Cucumis melo HOM05D000545 ORTHO05D000539 3.3e-10 68.9 87 47.1
Manes.06G163900 Manihot esculenta HOM05D000545 ORTHO05D000539 3.3e-10 68.9 92 45.7
Sabra09G0038600 Salix brachista HOM05D000545 ORTHO05D000539 3.3e-10 68.9 84 46.4
CsaV3_1G042800 Cucumis sativus L. HOM05D000545 ORTHO05D000539 5.6e-10 68.2 92 42.4
Sed0015811 Sechium edule HOM05D000545 ORTHO05D000539 7.3e-10 67.8 92 41.3
MELO3C015196.2 Cucumis melo HOM05D000545 ORTHO05D000539 9.5e-10 67.4 92 42.4
TAR623G1120 Trochodendron aralioides HOM05D000545 ORTHO05D000539 9.5e-10 67.4 77 46.8
Ca_14875_v3 Cicer arietinum L. HOM05D000545 ORTHO05D000539 1.2e-09 67.0 85 40.0
SGA_v2.0_scaffold247G44882 Striga asiatica HOM05D000545 ORTHO05D000539 1.2e-09 67.0 76 43.4
Atru.chr3.2710 Acer truncatum HOM05D000545 ORTHO05D000539 1.6e-09 66.6 60 51.7
CsaV3_6G039350 Cucumis sativus L. HOM05D000545 ORTHO05D000539 2.8e-09 65.9 63 49.2
ClCG03G013220 Citrullus lanatus HOM05D000545 ORTHO05D000539 3.6e-09 65.5 91 41.8
MD11G1192400 Malus domestica HOM05D000545 ORTHO05D000539 3.6e-09 65.5 92 45.7
Gorai.013G251200 Gossypium raimondii HOM05D000545 ORTHO05D000539 4.7e-09 65.1 90 45.6
ClCG02G023180 Citrullus lanatus HOM05D000545 ORTHO05D000539 6.1e-09 64.7 87 44.8
Lalb_Chr18g0050461 Lupinus albus HOM05D000545 ORTHO05D000539 8.0e-09 64.3 87 41.4
Oeu015662.1 Olea europaea HOM05D000545 ORTHO05D000539 8.0e-09 64.3 83 39.8
RcHm_v2.0_Chr5g0052231 Rosa chinensis HOM05D000545 ORTHO05D000539 8.0e-09 64.3 91 44.0
Oeu015663.1 Olea europaea HOM05D000545 ORTHO05D000539 1.0e-08 63.9 83 38.6
VMungo0647G1254 Vigna mungo HOM05D000545 ORTHO05D000539 1.4e-08 63.5 64 48.4
PGSC0003DMG400010697 Solanum tuberosum HOM05D000545 ORTHO05D000539 1.8e-08 63.2 78 48.7
Cpa.g.sc84.50 Carica papaya HOM05D000545 ORTHO05D024729 2.3e-08 62.8 90 45.6
Medtr3g061510 Medicago truncatula HOM05D000545 ORTHO05D000539 2.3e-08 62.8 89 38.2
Sed0016559 Sechium edule HOM05D000545 ORTHO05D000539 2.3e-08 62.8 64 48.4
Cc00_g07300 Coffea canephora HOM05D000545 ORTHO05D000539 3.1e-08 62.4 60 46.7
Sopen01g004020 Solanum pennellii HOM05D000545 ORTHO05D000539 6.8e-08 61.2 88 46.6
Solyc01g008490.4 Solanum lycopersicum HOM05D000545 ORTHO05D000539 8.9e-08 60.8 88 46.6
Lalb_Chr15g0082541 Lupinus albus HOM05D000545 ORTHO05D000539 1.2e-07 60.5 92 39.1
Glyma.14G010000 Glycine max HOM05D000545 ORTHO05D000539 1.5e-07 60.1 81 45.7
Psat5g165120 Pisum sativum HOM05D000545 ORTHO05D000539 1.5e-07 60.1 92 37.0
Duzib170G0603 Durio zibethinus HOM05D000545 ORTHO05D000539 2.6e-07 59.3 88 44.3
Potri.001G257600 Populus trichocarpa HOM05D000545 ORTHO05D000539 2.6e-07 59.3 87 41.4
SGA_v2.0_scaffold3G01501 Striga asiatica HOM05D000545 ORTHO05D000539 2.6e-07 59.3 71 46.5
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 4.4e-07 58.5 69 46.4
CAN.G821.12 Capsicum annuum HOM05D000545 ORTHO05D000539 5.8e-07 58.2 58 51.7
QL01p004648 Quercus lobata HOM05D000545 ORTHO05D000539 9.8e-07 57.4 92 41.3
Lalb_Chr20g0115211 Lupinus albus HOM05D000545 ORTHO05D000539 2.2e-06 56.2 89 40.4
Sed0019798 Sechium edule HOM05D000545 ORTHO05D000539 2.9e-06 55.8 63 49.2
TWI34G1873 Tripterygium wilfordii HOM05D000545 ORTHO05D000539 2.9e-06 55.8 91 42.9
Actinidia06344 Actinidia chinensis HOM05D000545 ORTHO05D053474 3.7e-06 55.5 49 63.3
Nn7g36222 Nelumbo nucifera HOM05D000545 ORTHO05D000539 6.4e-06 54.7 90 41.1
Oeu025871.1 Olea europaea HOM05D000545 ORTHO05D000539 6.4e-06 54.7 83 47.0


User provided reference genes

Program Settings