Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 6.1e-140 500.7 243 100.0
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 4.0e-123 444.9 243 87.2
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.3e-121 439.9 243 87.2
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 2.1e-116 422.5 243 82.7
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 3.6e-116 421.8 274 75.9
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 1.8e-115 419.5 243 82.7
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 7.5e-114 414.1 243 78.6
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 7.5e-114 414.1 242 81.0
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.7e-113 412.9 284 72.5
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 3.2e-112 408.7 243 79.8
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 7.1e-112 407.5 241 80.1
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 7.1e-112 407.5 244 79.5
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 7.1e-112 407.5 295 69.5
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.2e-111 406.8 243 78.6
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 1.2e-111 406.8 243 78.6
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 2.1e-111 406.0 228 83.8
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.1e-111 406.0 243 79.0
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 3.5e-111 405.2 243 79.0
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 3.5e-111 405.2 241 78.0
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 4.6e-111 404.8 243 78.2
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 4.6e-111 404.8 242 79.8
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 6.0e-111 404.4 242 79.3
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 1.3e-110 403.3 241 78.0
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.3e-110 402.5 243 78.2
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 2.3e-110 402.5 244 77.5
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.0e-110 402.1 243 78.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 6.6e-110 401.0 241 76.8
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 6.6e-110 401.0 243 78.2
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 6.6e-110 401.0 245 77.6
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.1e-109 400.2 244 78.3
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 1.9e-109 399.4 245 76.3
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 77.0
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 3.3e-109 398.7 243 78.2
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 3.3e-109 398.7 244 77.5
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.3e-109 398.7 244 77.5
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.3e-109 398.7 244 77.5
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 4.3e-109 398.3 241 76.3
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 4.3e-109 398.3 244 77.0
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 5.6e-109 397.9 241 76.8
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 5.6e-109 397.9 241 76.8
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 5.6e-109 397.9 257 74.7
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 9.5e-109 397.1 241 76.3
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 9.5e-109 397.1 241 76.8
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 1.2e-108 396.7 230 80.4
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 2.8e-108 395.6 243 77.4
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 3.6e-108 395.2 244 78.3
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 3.6e-108 395.2 244 76.2
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.6e-108 395.2 244 76.6
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 4.7e-108 394.8 242 76.4
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.2e-108 394.4 243 76.5
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 8.1e-108 394.0 244 77.0
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 1.1e-107 393.7 241 75.5
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 1.1e-107 393.7 239 74.9
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.1e-107 393.7 244 75.4
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 1.4e-107 393.3 244 75.4
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 76.2
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 2.4e-107 392.5 241 75.5
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 3.1e-107 392.1 241 74.7
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 3.1e-107 392.1 244 77.5
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 3.1e-107 392.1 241 75.5
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 5.2e-107 391.3 243 74.9
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 5.2e-107 391.3 242 75.6
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 5.2e-107 391.3 243 75.7
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 5.2e-107 391.3 275 69.1
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 6.8e-107 391.0 244 75.4
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.5e-106 389.8 244 76.6
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 2.0e-106 389.4 242 75.2
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 2.0e-106 389.4 238 76.9
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 74.6
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 2.6e-106 389.0 244 76.2
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 2.6e-106 389.0 244 77.5
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 3.4e-106 388.7 241 74.3
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 5.8e-106 387.9 242 74.8
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 77.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 7.6e-106 387.5 243 74.5
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.7e-105 386.3 244 76.2
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.9e-105 385.6 243 72.4
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 1.4e-104 383.3 241 73.9
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.9e-104 382.9 229 80.3
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 3.2e-104 382.1 241 74.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 4.2e-104 381.7 243 73.7
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 4.6e-103 378.3 243 71.6
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 6.0e-103 377.9 253 72.3
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.2e-100 370.2 224 78.1
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.8e-100 369.0 243 70.4
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.8e-99 366.3 327 59.0
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 6.9e-99 364.4 240 72.9
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.6e-98 362.5 243 69.5
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.9e-96 356.3 244 72.5
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 8.7e-94 347.4 242 69.0
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.1e-93 347.1 220 75.0
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 2.5e-93 345.9 214 75.7
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 4.9e-89 331.6 204 77.5
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.2e-88 328.6 205 76.1
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 3.9e-86 322.0 278 56.1
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 1.9e-85 319.7 219 72.1
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.6e-84 316.6 243 64.6
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.8e-84 315.8 300 57.7
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 4.8e-84 315.1 205 72.7
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.1e-83 313.9 243 63.8
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 2.0e-82 309.7 252 57.5
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 2.1e-79 299.7 250 56.0
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 5.1e-70 268.5 316 45.3
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.1e-64 250.8 249 51.4
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.4e-62 243.8 259 49.8
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.4e-59 233.8 250 50.8
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 4.2e-56 222.2 241 46.9
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 3.9e-54 215.7 340 41.5
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 5.7e-53 211.8 145 72.4
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.4e-53 211.5 122 83.6
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.7e-52 210.3 255 41.6
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 3.0e-46 189.5 109 78.0
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.2e-40 169.1 120 68.3
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 8.3e-36 154.8 96 75.0
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.2e-34 151.0 81 79.0
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.1e-23 113.6 83 65.1
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.1e-23 113.6 83 65.1
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.2e-20 103.6 57 80.7
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.4e-19 100.9 74 64.9
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.3e-17 94.4 139 46.0
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 4.0e-14 82.8 69 60.9
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 1.5e-13 80.9 51 68.6
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 2.0e-13 80.5 127 40.2
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 7.5e-13 78.6 51 66.7
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 7.5e-13 78.6 51 66.7
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 3.2e-11 73.2 73 46.6
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.7e-09 67.4 43 65.1
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 1.9e-08 63.9 37 73.0
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 3.6e-07 59.7 38 63.2
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.6e-07 59.7 77 39.0
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 4.7e-07 59.3 65 44.6
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 6.2e-07 58.9 87 35.6
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.0e-07 58.5 73 43.8
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.8e-06 57.4 76 40.8
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.3e-06 57.0 75 37.3
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 2.3e-06 57.0 90 36.7
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 4.0e-06 56.2 102 34.3
SEGI_11603 Sequoiadendron giganteum HOM05D005979 ORTHO05D386967 8.9e-06 55.1 49 53.1


User provided reference genes

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