Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.6e-95 352.8 185 100.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.5e-61 240.0 185 64.3
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.9e-61 239.6 184 64.1
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.5e-58 229.9 185 71.4
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.5e-58 229.9 182 62.1
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.0e-57 227.3 185 60.5
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 8.4e-57 224.2 182 61.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.1e-56 223.8 184 60.3
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 2.1e-55 219.5 190 56.3
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.3e-54 216.9 134 73.9
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.0e-54 215.7 184 56.5
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 5.1e-54 214.9 193 57.5
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 5.1e-54 214.9 193 57.5
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 5.1e-54 214.9 184 59.2
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.9e-53 213.0 185 60.5
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.5e-53 212.6 180 58.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.5e-53 212.6 197 52.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.3e-53 211.8 185 57.8
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 5.7e-53 211.5 197 52.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 5.7e-53 211.5 193 57.5
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.7e-53 211.5 199 54.3
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 9.6e-53 210.7 194 54.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.3e-52 210.3 185 55.1
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.3e-52 210.3 185 55.1
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.6e-52 209.9 197 52.3
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.6e-52 209.9 185 56.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.8e-52 209.1 185 54.1
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.8e-52 209.1 185 54.1
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.7e-52 208.8 209 54.1
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 4.8e-52 208.4 196 61.7
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.8e-52 208.4 184 54.9
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.3e-52 208.0 185 55.1
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.1e-51 207.2 186 55.9
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.4e-51 206.1 189 53.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.1e-51 205.3 185 54.1
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 5.3e-51 204.9 184 56.5
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 6.9e-51 204.5 204 52.9
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.0e-51 204.1 185 52.4
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 9.0e-51 204.1 185 56.2
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.2e-50 203.8 124 71.0
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.0e-50 203.0 185 56.2
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.6e-50 202.6 202 53.0
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.7e-49 199.9 184 53.8
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 5.0e-49 198.4 197 52.8
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-48 197.2 199 50.8
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 2.5e-48 196.1 185 54.1
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.5e-48 196.1 184 50.5
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 4.2e-48 195.3 122 68.9
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 9.3e-48 194.1 184 51.6
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.2e-47 193.7 130 65.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 2.1e-47 193.0 121 69.4
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.1e-47 193.0 184 54.3
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.7e-47 192.6 189 52.9
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 3.6e-47 192.2 185 50.8
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.1e-47 191.4 134 64.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.3e-46 190.3 186 51.1
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.8e-46 189.9 145 58.6
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 2.3e-46 189.5 185 51.4
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 2.3e-46 189.5 185 51.4
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.7e-46 188.0 116 69.8
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 6.7e-46 188.0 199 50.3
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.5e-45 186.8 185 49.7
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 2.5e-45 186.0 145 58.6
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.5e-45 186.0 123 67.5
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.5e-45 186.0 114 67.5
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.3e-45 185.7 143 61.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.3e-45 185.3 132 65.9
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 5.7e-45 184.9 129 66.7
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 5.7e-45 184.9 125 65.6
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 7.4e-45 184.5 123 64.2
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 9.7e-45 184.1 146 57.5
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-44 183.7 146 58.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.6e-44 183.3 158 53.2
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.6e-44 183.3 124 67.7
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.6e-44 183.3 121 68.6
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.2e-44 183.0 153 58.2
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 2.2e-44 183.0 134 59.0
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.7e-44 182.2 184 51.1
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.7e-44 182.2 184 51.1
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 3.7e-44 182.2 122 63.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.8e-44 181.8 136 63.2
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 6.3e-44 181.4 134 60.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 6.3e-44 181.4 145 59.3
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 6.3e-44 181.4 138 63.0
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.1e-43 180.6 145 56.6
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-43 180.3 146 57.5
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.4e-43 180.3 112 69.6
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.8e-43 179.9 114 66.7
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.4e-43 179.5 131 61.1
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.1e-43 178.7 162 50.6
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 6.9e-43 177.9 162 50.6
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 9.1e-43 177.6 183 48.6
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.2e-42 177.2 131 61.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.5e-42 176.8 184 50.5
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-42 176.8 184 48.4
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.0e-42 176.4 184 51.6
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.0e-42 176.4 156 52.6
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.5e-42 175.3 121 65.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 4.5e-42 175.3 184 48.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 7.7e-42 174.5 150 55.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.0e-41 174.1 140 55.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.3e-41 173.7 122 60.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.3e-41 173.7 147 56.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.7e-41 173.3 140 55.7
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 3.8e-41 172.2 128 63.3
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 3.8e-41 172.2 144 56.9
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.8e-41 172.2 155 54.2
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 5.0e-41 171.8 152 52.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 5.0e-41 171.8 152 52.0
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 8.5e-41 171.0 152 51.3
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 8.5e-41 171.0 152 51.3
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 8.5e-41 171.0 152 51.3
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 8.5e-41 171.0 152 51.3
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.4e-40 170.2 128 59.4
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 128 59.4
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.9e-40 169.9 150 54.0
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.5e-40 169.5 154 51.9
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.5e-40 169.5 154 51.9
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.5e-40 169.5 154 51.9
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 4.2e-40 168.7 152 52.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.5e-40 168.3 154 50.0
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 5.5e-40 168.3 181 49.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.5e-40 168.3 120 60.0
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 7.2e-40 167.9 121 62.8
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-39 166.4 114 62.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-39 166.4 114 61.4
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.1e-39 166.4 179 48.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.7e-39 166.0 135 55.6
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.8e-38 163.3 145 53.8
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.1e-38 161.8 114 57.9
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.2e-36 156.4 144 50.0
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.7e-36 155.6 193 43.5
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.3e-36 154.8 114 62.3
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.1e-35 154.1 140 53.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.5e-34 150.2 125 51.2
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.7e-33 146.7 129 52.7
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.7e-33 146.7 122 51.6
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-33 146.7 109 56.0
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.9e-33 146.0 151 50.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 8.5e-33 144.4 148 47.3
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.9e-32 143.3 134 49.3
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 7.2e-32 141.4 131 51.1
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.2e-32 141.4 102 56.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 6.1e-31 138.3 98 63.3
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.3e-29 132.5 116 52.6
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.7e-29 131.7 93 65.6
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.3e-28 130.6 110 59.1
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.7e-28 130.2 96 63.5
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.0e-26 123.2 109 55.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.6e-26 122.9 123 43.9
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 3.5e-26 122.5 114 50.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.3e-25 120.6 111 48.6
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-25 120.6 84 60.7
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.2e-23 114.0 147 39.5
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.1e-23 113.2 120 44.2
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.6e-23 112.5 107 43.0
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 8.0e-23 111.3 119 45.4
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.8e-22 110.2 122 44.3
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.3e-22 109.8 76 67.1
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 6.7e-22 108.2 107 47.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 8.8e-22 107.8 146 38.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-20 104.0 94 51.1
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.7e-20 102.4 122 44.3
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.4e-19 100.5 145 36.6
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.0e-17 94.4 68 58.8
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 6.1e-15 85.1 131 35.1
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.8e-14 83.6 52 67.3
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.3e-14 83.2 66 54.5
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.5e-08 63.9 101 37.6
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.0e-06 57.8 43 60.5
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.4e-06 57.4 38 60.5


User provided reference genes

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