Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.6e-213 744.2 425 100.0
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 6.2e-196 687.6 448 89.5
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.5e-173 612.5 450 75.8
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.4e-170 602.1 448 75.4
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.1e-163 580.5 459 75.2
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.9e-163 577.8 448 70.5
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-162 577.0 448 71.0
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-162 577.0 412 76.0
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 7.6e-162 574.3 449 72.6
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.4e-160 570.1 448 69.9
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 9.3e-160 567.4 448 69.9
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.0e-158 563.9 410 73.9
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.3e-158 562.8 453 69.1
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 8.7e-158 560.8 446 70.2
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 1.9e-157 559.7 411 75.7
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 4.8e-156 555.1 413 71.9
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 8.2e-156 554.3 446 70.2
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 8.2e-156 554.3 410 72.9
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.3e-153 547.0 450 72.2
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.8e-153 545.4 448 68.8
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.1e-152 543.9 453 68.4
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.9e-152 543.1 406 73.6
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 4.2e-152 542.0 448 69.6
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.1e-151 539.7 413 71.4
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 4.6e-151 538.5 408 73.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.4e-150 537.0 414 70.8
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.3e-150 536.2 413 71.2
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.3e-149 532.3 413 71.4
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.7e-149 531.6 413 71.4
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 7.4e-149 531.2 411 71.5
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 2.2e-148 529.6 452 66.6
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 6.3e-148 528.1 453 67.5
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.1e-147 527.3 406 72.4
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.4e-147 526.9 412 71.6
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 5.3e-147 525.0 451 66.1
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 6.9e-147 524.6 405 71.6
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 9.1e-147 524.2 457 70.9
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-146 523.5 431 67.3
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.6e-146 522.7 456 67.1
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.0e-145 520.8 450 66.0
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 6.5e-145 518.1 454 65.4
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 6.5e-145 518.1 412 69.7
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 6.5e-145 518.1 418 69.9
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.4e-144 516.9 451 65.9
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.9e-144 516.5 406 70.2
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 4.2e-144 515.4 412 68.9
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 5.5e-144 515.0 454 68.9
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 9.4e-144 514.2 453 66.7
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 2.7e-143 512.7 453 63.6
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.4e-142 510.4 450 65.8
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.4e-142 510.4 451 65.0
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 3.0e-142 509.2 450 69.6
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.9e-142 508.8 449 68.2
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.5e-141 506.9 453 66.2
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 4.4e-141 505.4 412 68.4
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.7e-140 503.4 453 66.0
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 3.7e-140 502.3 453 67.1
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 4.8e-140 501.9 449 63.5
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 8.2e-140 501.1 414 67.4
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.1e-139 500.7 458 63.8
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 1.4e-139 500.4 451 64.3
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 1.4e-139 500.4 451 64.3
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.8e-139 500.0 451 64.1
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.8e-139 500.0 451 63.6
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 3.1e-139 499.2 453 64.0
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.3e-139 498.4 441 68.5
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 5.3e-139 498.4 445 67.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 5.3e-139 498.4 455 63.1
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 9.1e-139 497.7 451 63.9
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 9.1e-139 497.7 414 67.9
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 1.5e-138 496.9 446 63.5
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 3.4e-138 495.7 409 69.2
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 4.5e-138 495.4 412 67.2
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.0e-137 494.2 458 63.3
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.7e-137 493.4 455 66.2
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.5e-136 489.6 452 65.3
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.1e-135 486.5 308 86.0
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.1e-135 486.5 441 63.5
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 4.7e-135 485.3 447 63.1
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 4.7e-135 485.3 463 62.9
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 8.0e-135 484.6 386 69.7
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.8e-134 483.4 408 66.4
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.8e-134 483.4 445 62.2
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.8e-134 483.4 445 62.2
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.8e-134 483.4 445 62.2
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.8e-134 483.4 412 66.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.3e-134 483.0 411 66.2
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-134 483.0 446 63.0
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 2.3e-134 483.0 404 65.8
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 2.3e-134 483.0 411 66.7
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 3.9e-134 482.3 452 62.4
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 5.2e-134 481.9 453 62.7
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.2e-134 481.9 453 62.7
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 5.2e-134 481.9 452 62.4
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 8.8e-134 481.1 442 62.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.5e-133 480.3 448 62.3
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.5e-133 480.3 453 62.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.0e-133 479.9 452 61.9
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.6e-133 479.6 408 67.4
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 9.7e-133 477.6 453 62.3
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.3e-132 477.2 449 62.8
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.8e-132 476.1 455 62.4
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.8e-132 475.3 453 62.0
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.0e-129 467.6 405 65.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 8.5e-129 464.5 410 63.7
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.7e-127 459.5 413 63.2
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.7e-127 458.8 445 59.6
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.3e-126 456.4 411 64.0
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-126 456.4 445 60.4
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.7e-122 443.0 447 56.6
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 5.5e-120 435.3 450 56.7
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 3.6e-119 432.6 446 61.2
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 4.7e-119 432.2 411 63.0
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.0e-118 431.0 453 58.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.8e-118 430.3 345 68.4
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 3.8e-113 412.5 456 55.5
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.2e-111 407.5 464 51.1
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 8.9e-110 401.4 392 59.9
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.6e-109 399.8 338 70.7
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 8.3e-108 394.8 335 64.2
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.8e-107 393.7 414 58.0
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 5.6e-104 382.1 410 55.9
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.0e-102 377.9 425 55.3
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.0e-102 377.9 409 55.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 7.5e-101 371.7 357 59.7
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 2.3e-89 333.6 425 46.8
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.6e-88 328.9 257 67.7
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 2.9e-84 316.6 417 44.6
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.7e-82 310.1 313 55.9
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.8e-78 297.4 434 45.9
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 5.1e-73 279.3 419 43.0
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 7.3e-72 275.4 222 65.8
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.1e-66 257.3 242 62.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 3.9e-65 253.1 234 61.1
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 7.1e-59 232.3 165 79.4
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.7e-58 230.3 164 76.2
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 6.0e-58 229.2 220 59.5
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.0e-58 229.2 179 68.7
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 3.7e-55 219.9 246 54.5
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.2e-51 206.5 167 66.5
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 6.9e-46 189.1 163 62.6
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 5.5e-43 179.5 154 64.3
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.2e-35 153.7 138 63.8
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.5e-32 144.1 439 32.6
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.7e-31 141.4 437 30.7
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.5e-21 106.7 119 54.6
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.8e-20 103.6 101 58.4
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.1e-19 102.1 494 28.5
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 4.2e-19 100.1 111 63.1
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-18 98.6 69 72.5
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 9.7e-16 89.0 81 61.7
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.8e-14 84.7 154 44.2
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.8e-14 84.7 57 73.7
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 2.2e-12 77.8 88 46.6
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 5.5e-11 73.2 53 67.9
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 9.4e-11 72.4 53 67.9
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 5.7e-08 63.2 47 66.0
Sopen01g018800 Solanum pennellii HOM05D003777 ORTHO05D393350 3.1e-06 57.4 142 34.5


User provided reference genes

Program Settings