Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.8e-196 687.6 333 100.0
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.2e-194 682.9 333 99.1
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.3e-161 572.4 329 82.1
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 4.0e-158 561.6 356 76.1
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 6.2e-151 537.7 331 77.3
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 5.6e-144 514.6 329 75.1
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 5.6e-136 488.0 329 72.3
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 4.8e-135 485.0 331 69.5
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 3.5e-130 468.8 328 67.7
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.5e-130 468.8 331 66.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 6.7e-129 464.5 306 69.6
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.5e-128 463.4 298 71.5
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.9e-128 463.0 289 74.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 4.3e-128 461.8 294 73.5
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 7.4e-128 461.1 333 65.8
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.7e-127 458.8 289 73.0
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.7e-127 458.8 328 66.5
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 3.7e-127 458.8 287 71.1
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 2.4e-126 456.1 330 67.0
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.0e-126 455.3 293 71.7
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 6.9e-126 454.5 325 67.1
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 6.9e-126 454.5 287 71.4
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.2e-125 453.8 283 73.5
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.2e-125 453.8 336 66.1
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.2e-125 453.8 329 66.3
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.0e-125 453.0 327 66.4
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 4.5e-125 451.8 308 66.6
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.3e-124 450.3 259 79.9
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.7e-124 449.9 291 72.5
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.2e-124 449.5 301 67.4
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.9e-124 449.1 328 66.8
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.9e-124 449.1 322 66.8
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 2.9e-124 449.1 336 65.5
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 4.9e-124 448.4 299 69.6
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.1e-123 447.2 343 62.1
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 2.5e-123 446.0 331 65.0
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 9.3e-123 444.1 340 62.6
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.1e-122 443.0 326 66.3
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.0e-121 440.7 329 63.2
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.3e-121 440.3 331 64.4
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 8.7e-121 437.6 290 69.0
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 2.8e-119 432.6 284 68.0
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.8e-118 429.9 327 62.7
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.2e-117 427.2 329 61.1
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.2e-117 427.2 341 62.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 3.4e-117 425.6 334 62.0
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.5e-115 419.5 251 76.5
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 9.4e-115 417.5 249 74.7
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.0e-113 414.1 250 75.6
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.1e-112 410.6 323 63.2
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 2.0e-112 409.8 281 64.1
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 3.3e-112 409.1 284 68.0
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.8e-111 406.0 256 73.4
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 4.8e-111 405.2 281 68.0
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-110 403.7 284 66.9
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.8e-110 403.3 301 64.8
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.8e-110 403.3 328 57.6
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 3.1e-110 402.5 291 64.3
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-109 400.2 309 62.5
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 4.5e-109 398.7 315 58.1
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 7.7e-109 397.9 251 72.5
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.3e-108 397.1 328 57.0
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.3e-108 397.1 349 58.2
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 2.2e-108 396.4 312 61.2
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.9e-108 396.0 328 56.4
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 3.2e-107 392.5 313 57.5
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 3.2e-107 392.5 319 56.7
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 4.2e-107 392.1 297 59.9
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 4.2e-107 392.1 281 65.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 5.5e-107 391.7 328 57.0
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.2e-106 390.6 315 57.5
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 4.7e-106 388.7 294 59.9
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 7.9e-106 387.9 298 58.7
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 7.9e-106 387.9 221 78.3
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 5.1e-105 385.2 315 56.5
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 6.7e-105 384.8 328 56.1
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 8.8e-105 384.4 329 55.6
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-104 384.0 315 56.2
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.4e-104 382.1 315 56.2
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 7.4e-104 381.3 248 68.1
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.1e-102 375.9 286 62.9
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.0e-100 370.9 286 60.1
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.4e-99 367.1 250 69.2
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 6.1e-98 361.7 247 66.4
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.8e-97 360.1 293 60.1
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.3e-97 359.8 330 56.7
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 5.9e-93 345.1 295 54.2
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 7.7e-93 344.7 328 52.1
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.7e-92 343.6 286 58.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.5e-91 339.7 308 52.3
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 4.7e-90 335.5 256 64.1
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.0e-88 330.1 190 78.9
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.1e-86 324.3 333 50.2
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 2.7e-85 319.7 281 56.2
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.6e-82 310.5 201 71.1
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.7e-82 309.7 223 65.0
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 3.6e-82 309.3 283 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 6.8e-81 305.1 279 49.8
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.2e-80 304.3 191 70.2
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 5.7e-80 302.0 278 48.2
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 7.5e-80 301.6 214 64.5
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.3e-79 300.8 165 81.2
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.0e-77 293.5 336 50.6
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.9e-75 287.0 302 45.4
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 4.2e-75 285.8 284 48.6
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.2e-70 269.6 166 78.9
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 9.5e-67 258.1 154 73.4
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.3e-65 253.4 153 71.9
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.2e-65 252.3 241 56.4
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.7e-63 247.3 178 66.3
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.7e-63 246.1 241 54.8
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.8e-56 222.2 234 49.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 5.4e-54 215.7 152 65.1
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-52 211.1 184 59.2
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.2e-45 188.0 231 46.3
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 3.9e-44 183.0 117 68.4
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.5e-43 181.0 195 50.3
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.5e-43 180.3 127 63.8
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 4.3e-43 179.5 278 38.5
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 4.0e-41 172.9 216 37.0
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 4.4e-40 169.5 148 57.4
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.2e-37 161.4 112 74.1
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 3.5e-37 159.8 149 59.7
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 7.8e-37 158.7 77 90.9
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.1e-35 154.8 132 56.1
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 5.3e-33 146.0 127 55.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.1e-27 128.3 102 61.8
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.9e-27 127.5 220 41.4
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.6e-26 124.4 100 61.0
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.6e-24 115.5 64 82.8
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.0e-20 103.6 76 57.9
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.8e-15 86.7 85 52.9
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 6.0e-13 79.3 82 52.4


User provided reference genes

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