Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034710 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.3e-60 235.3 117 100.0
CSS0011029 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.3e-50 203.0 151 73.5
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.1e-49 196.8 156 69.2
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.1e-49 196.8 156 69.2
CSS0013740 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.5e-46 189.5 150 69.3
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 1.9e-46 189.1 156 66.7
CSS0000572 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.4e-46 186.8 151 67.5
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.6e-45 184.9 156 64.7
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.5e-43 179.5 156 62.8
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 7.5e-43 177.2 156 63.5
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 7.5e-43 177.2 156 62.2
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 3.7e-42 174.9 156 61.5
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 4.8e-42 174.5 156 60.9
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 4.8e-42 174.5 156 60.3
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 8.3e-42 173.7 156 60.9
Lj2A20T45 Lonicera japonica HOM05D003507 ORTHO05D004324 1.1e-41 173.3 156 61.5
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 1.1e-41 173.3 156 59.0
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 1.8e-41 172.6 156 58.3
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 1.8e-41 172.6 156 60.3
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 1.8e-41 172.6 156 59.6
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 3.1e-41 171.8 156 60.9
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 4.1e-41 171.4 156 59.0
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 5.4e-41 171.0 156 60.3
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 5.4e-41 171.0 156 58.3
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 7.0e-41 170.6 156 59.6
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 7.0e-41 170.6 156 59.6
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 9.1e-41 170.2 156 57.7
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 1.6e-40 169.5 156 59.0
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 1.6e-40 169.5 156 59.6
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 1.6e-40 169.5 156 57.7
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 2.0e-40 169.1 156 59.0
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 2.0e-40 169.1 156 58.3
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 2.0e-40 169.1 156 59.6
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 2.7e-40 168.7 156 59.6
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 3.5e-40 168.3 163 56.4
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.5e-40 168.3 156 59.0
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.5e-40 168.3 156 59.0
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 3.5e-40 168.3 156 59.6
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 4.5e-40 167.9 156 57.7
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 5.9e-40 167.5 156 57.7
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 5.9e-40 167.5 156 57.1
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.9e-40 167.5 156 58.3
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.9e-40 167.5 156 58.3
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 5.9e-40 167.5 156 57.7
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 5.9e-40 167.5 156 56.4
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 7.7e-40 167.2 156 58.3
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 7.7e-40 167.2 156 58.3
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 7.7e-40 167.2 156 57.7
Nitab4.5_0027540g0010 Nicotiana tabacum HOM05D003507 ORTHO05D004324 7.7e-40 167.2 156 58.3
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 7.7e-40 167.2 156 58.3
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 1.0e-39 166.8 156 57.7
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 1.0e-39 166.8 156 57.7
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.9e-39 165.2 156 56.4
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 5.0e-39 164.5 156 58.3
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.0e-39 164.5 156 59.0
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 5.0e-39 164.5 156 59.0
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 5.0e-39 164.5 156 56.4
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 8.6e-39 163.7 156 59.0
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 8.6e-39 163.7 156 60.3
Oeu000789.2 Olea europaea HOM05D003507 ORTHO05D004324 8.6e-39 163.7 199 49.2
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 1.1e-38 163.3 156 57.1
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 1.1e-38 163.3 156 57.1
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 1.1e-38 163.3 156 57.7
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.5e-38 162.2 156 55.8
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 2.5e-38 162.2 156 56.4
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 2.5e-38 162.2 156 55.8
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 2.5e-38 162.2 156 56.4
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 3.3e-38 161.8 156 56.4
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 7.2e-38 160.6 156 56.4
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 1.2e-37 159.8 156 56.4
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.2e-37 159.8 156 54.5
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 1.6e-37 159.5 156 57.1
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 2.1e-37 159.1 156 57.1
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 2.1e-37 159.1 156 54.5
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.8e-37 158.7 156 56.4
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.8e-37 158.7 156 56.4
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 2.8e-37 158.7 156 55.1
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 4.7e-37 157.9 156 54.5
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 4.7e-37 157.9 156 55.8
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 6.1e-37 157.5 156 55.8
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 6.1e-37 157.5 156 56.4
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 6.1e-37 157.5 156 55.8
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 6.1e-37 157.5 156 55.8
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 8.0e-37 157.1 156 54.5
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 1.0e-36 156.8 156 55.1
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.0e-36 156.8 156 55.8
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 1.8e-36 156.0 156 53.2
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 1.8e-36 156.0 156 54.5
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 2.3e-36 155.6 156 55.8
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 2.3e-36 155.6 156 53.2
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 4.0e-36 154.8 156 51.3
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 4.0e-36 154.8 156 52.6
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 5.2e-36 154.5 150 55.3
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 5.2e-36 154.5 156 52.6
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 8.9e-36 153.7 156 52.6
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 8.9e-36 153.7 156 52.6
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 8.9e-36 153.7 156 54.5
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 1.2e-35 153.3 156 53.2
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 1.2e-35 153.3 156 51.9
SEGI_18211 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 1.2e-35 153.3 156 51.3
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 1.5e-35 152.9 156 54.5
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 1.5e-35 152.9 156 54.5
BcaNung06832 Brassica carinata HOM05D003507 ORTHO05D004324 2.0e-35 152.5 156 51.9
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 2.0e-35 152.5 156 52.6
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 2.0e-35 152.5 156 52.6
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 2.0e-35 152.5 156 51.9
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 2.0e-35 152.5 156 54.5
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 2.6e-35 152.1 156 51.9
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 2.6e-35 152.1 156 51.9
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 3.4e-35 151.8 156 51.3
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 3.4e-35 151.8 156 51.3
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 3.4e-35 151.8 156 54.5
VMungo0251G1768 Vigna mungo HOM05D003507 ORTHO05D004324 3.4e-35 151.8 156 51.9
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 4.4e-35 151.4 156 51.9
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 4.4e-35 151.4 156 51.9
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 4.4e-35 151.4 156 53.2
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 4.4e-35 151.4 156 51.9
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 5.7e-35 151.0 156 51.3
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 5.7e-35 151.0 156 51.9
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 7.5e-35 150.6 156 51.3
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 7.5e-35 150.6 156 51.3
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 1.3e-34 149.8 156 52.6
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 1.3e-34 149.8 156 53.8
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 3.7e-34 148.3 156 51.3
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 3.7e-34 148.3 156 51.3
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 4.9e-34 147.9 156 51.9
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.4e-33 146.4 156 51.3
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 1.4e-33 146.4 156 51.3
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 1.8e-33 146.0 156 53.8
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 2.4e-33 145.6 156 48.7
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 2.4e-33 145.6 156 48.7
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 2.4e-33 145.6 156 50.0
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 7.0e-33 144.1 156 50.6
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 9.2e-33 143.7 156 50.0
Os04g0224900 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D004324 1.2e-32 143.3 156 49.4
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 1.6e-32 142.9 156 51.9
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 4.5e-32 141.4 156 48.7
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 4.5e-32 141.4 156 46.8
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 1.3e-31 139.8 156 48.1
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 1.7e-31 139.4 156 48.7
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 2.3e-31 139.0 156 49.4
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 3.8e-31 138.3 156 48.1
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 6.6e-31 137.5 156 47.4
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 1.1e-30 136.7 156 50.6
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 9.5e-30 133.7 87 74.7
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.1e-29 132.5 156 45.5
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.8e-29 132.1 156 44.9
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.4e-28 129.8 135 57.8
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 1.4e-28 129.8 86 74.4
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 2.3e-28 129.0 156 46.8
Cpa.g.sc2869.1 Carica papaya HOM05D003507 ORTHO05D004324 5.8e-27 124.4 86 68.6
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 1.1e-25 120.2 86 66.3
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 4.6e-24 114.8 156 41.7
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 4.6e-24 114.8 156 42.3
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 6.0e-24 114.4 156 42.3
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 3.9e-23 111.7 156 42.3
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 5.0e-23 111.3 87 62.1
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.2e-21 106.7 156 40.4
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.1e-20 103.6 140 45.7
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 2.6e-19 99.0 86 58.1
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 4.3e-06 55.1 178 27.5
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 5.6e-06 54.7 177 27.7


User provided reference genes

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