Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.7e-80 302.0 156 100.0
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.2e-64 250.0 154 87.7
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.9e-50 201.4 110 92.7
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.4e-49 199.9 110 92.7
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 4.2e-49 198.4 102 95.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 9.3e-49 197.2 110 90.9
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 9.3e-49 197.2 102 93.1
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 9.3e-49 197.2 110 90.9
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 3.5e-48 195.3 102 92.2
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 7.9e-48 194.1 102 93.1
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.3e-47 193.4 110 88.2
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.3e-47 193.4 102 92.2
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.3e-47 193.4 105 90.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.8e-47 193.0 102 93.1
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.8e-47 193.0 102 92.2
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 2.3e-47 192.6 147 70.1
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.3e-47 192.6 101 93.1
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.1e-47 191.4 101 91.1
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.7e-47 191.0 102 92.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 6.7e-47 191.0 102 92.2
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.7e-47 191.0 102 92.2
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 6.7e-47 191.0 102 92.2
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.7e-47 191.0 101 92.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 6.7e-47 191.0 110 88.2
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 8.7e-47 190.7 102 90.2
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 8.7e-47 190.7 102 90.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 8.7e-47 190.7 102 92.2
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 8.7e-47 190.7 102 92.2
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.1e-46 190.3 102 89.2
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.1e-46 190.3 149 69.8
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 1.1e-46 190.3 149 70.5
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-46 189.9 149 70.5
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.5e-46 189.9 106 86.8
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.9e-46 189.5 102 91.2
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.5e-46 189.1 147 68.7
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.5e-46 189.1 102 91.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.5e-46 189.1 102 88.2
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.5e-46 189.1 102 89.2
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 3.3e-46 188.7 149 69.1
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.3e-46 188.7 118 80.5
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.3e-46 188.7 149 69.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.3e-46 188.7 147 69.4
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.3e-46 188.7 149 68.5
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 4.3e-46 188.3 102 88.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 4.3e-46 188.3 102 89.2
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 4.3e-46 188.3 102 90.2
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 5.6e-46 188.0 149 69.8
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 7.4e-46 187.6 118 82.2
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 7.4e-46 187.6 102 89.2
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 7.4e-46 187.6 102 88.2
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 7.4e-46 187.6 149 68.5
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 7.4e-46 187.6 146 68.5
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 7.4e-46 187.6 102 88.2
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.4e-46 187.6 149 68.5
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 9.6e-46 187.2 102 88.2
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 9.6e-46 187.2 102 90.2
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.6e-45 186.4 101 89.1
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.6e-45 186.4 149 69.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.6e-45 186.4 149 69.8
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.6e-45 186.4 149 69.1
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.6e-45 186.4 106 85.8
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-45 186.4 149 67.8
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.1e-45 186.0 102 87.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.1e-45 186.0 102 87.3
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.1e-45 186.0 102 89.2
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.1e-45 186.0 102 89.2
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 2.1e-45 186.0 102 87.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.1e-45 186.0 102 91.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.1e-45 186.0 149 69.1
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 2.1e-45 186.0 147 66.7
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.8e-45 185.7 105 85.7
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 2.8e-45 185.7 102 87.3
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.8e-45 185.7 106 84.9
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.8e-45 184.9 102 88.2
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 4.8e-45 184.9 102 88.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.2e-45 184.5 149 69.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 6.2e-45 184.5 102 87.3
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 8.2e-45 184.1 141 70.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.4e-44 183.3 102 87.3
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.4e-44 183.3 102 87.3
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.4e-44 183.3 114 79.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.4e-44 183.3 102 87.3
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.4e-44 182.6 102 88.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.1e-44 182.2 102 85.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.0e-44 181.8 110 84.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.0e-44 181.8 149 65.8
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 5.3e-44 181.4 102 85.3
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 5.3e-44 181.4 102 85.3
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 5.3e-44 181.4 102 85.3
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.3e-44 181.4 102 85.3
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 5.3e-44 181.4 149 66.4
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 9.0e-44 180.6 102 85.3
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 9.0e-44 180.6 102 85.3
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.2e-43 180.3 102 84.3
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.2e-43 180.3 102 84.3
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-43 180.3 102 84.3
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.2e-43 180.3 149 66.4
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.2e-43 180.3 149 65.8
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.0e-43 179.5 108 83.3
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 2.0e-43 179.5 173 60.7
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.0e-43 179.5 102 84.3
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.0e-43 179.5 102 84.3
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 2.6e-43 179.1 102 85.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 4.5e-43 178.3 102 82.4
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 4.5e-43 178.3 102 86.3
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 4.5e-43 178.3 101 82.2
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 4.5e-43 178.3 105 85.7
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 5.8e-43 177.9 102 83.3
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.0e-42 177.2 102 83.3
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-42 177.2 102 83.3
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-42 177.2 102 81.4
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-42 177.2 102 83.3
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.0e-42 177.2 102 83.3
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.0e-42 177.2 102 81.4
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.0e-42 177.2 102 83.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.3e-42 176.8 102 82.4
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.7e-42 176.4 102 82.4
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.9e-42 175.6 102 82.4
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.7e-40 169.1 102 76.5
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 7.9e-40 167.5 148 60.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.0e-39 167.2 148 60.1
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.0e-39 165.6 148 60.8
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.3e-38 161.8 149 57.7
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 7.2e-33 144.4 102 70.6
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 7.4e-30 134.4 101 60.4
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 9.7e-30 134.0 102 62.7
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 9.7e-30 134.0 102 62.7
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 9.7e-30 134.0 102 59.8
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.4e-28 130.2 102 64.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 7.7e-27 124.4 65 93.8
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.7e-24 115.9 76 78.9
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 3.6e-24 115.5 102 55.9
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.0e-23 114.0 111 59.5
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.5e-22 110.2 125 56.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 4.5e-19 98.6 104 47.1
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 8.5e-18 94.4 49 91.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 4.2e-17 92.0 48 91.7
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.6e-16 89.0 51 80.4
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 5.3e-12 75.1 38 92.1
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.5e-09 67.0 35 82.9
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.9e-09 66.6 108 36.1
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.6e-06 56.2 68 41.2


User provided reference genes

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