Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 0.0e+00 1183.3 722 100.0
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.3e-238 830.1 728 72.8
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.8e-235 819.7 728 72.4
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 2.7e-220 769.2 727 69.3
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 8.0e-212 741.1 728 66.5
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.5e-210 736.9 747 64.8
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.1e-208 729.2 725 66.3
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 5.0e-206 721.8 736 63.5
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 9.5e-205 717.6 737 63.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.5e-205 717.6 751 65.2
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.8e-203 713.4 730 65.6
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.5e-202 710.3 730 65.5
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 7.5e-202 708.0 744 65.3
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 3.2e-200 702.6 589 79.6
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 5.4e-200 701.8 740 63.8
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 9.2e-200 701.0 771 63.4
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 6.0e-199 698.4 610 68.0
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-198 696.8 740 63.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 8.6e-198 694.5 550 67.8
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.9e-197 693.3 742 63.9
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.9e-197 693.3 609 69.3
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 4.3e-197 692.2 609 69.1
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.2e-196 688.3 741 62.5
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 3.1e-195 686.0 526 68.8
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.4e-194 682.2 743 62.7
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.2e-193 679.9 527 68.7
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 1.9e-192 676.8 740 62.8
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 3.2e-192 676.0 527 70.6
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.2e-191 674.1 731 64.3
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 2.1e-191 673.3 539 64.7
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.5e-191 672.5 728 62.4
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 7.8e-191 671.4 519 70.3
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.0e-190 671.0 524 70.2
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.3e-190 669.8 488 70.7
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.3e-190 669.8 709 62.2
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.5e-189 667.2 526 69.6
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.5e-189 666.4 534 67.6
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 4.3e-189 665.6 496 71.4
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 7.3e-189 664.8 528 68.6
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 7.3e-189 664.8 723 58.2
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.6e-188 663.7 529 67.7
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.6e-188 662.5 751 64.7
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 6.2e-188 661.8 612 67.5
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 5.2e-187 658.7 615 67.0
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 7.5e-186 654.8 530 67.7
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.3e-185 654.1 530 67.7
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.3e-185 654.1 536 67.5
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.7e-185 653.7 609 66.7
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.1e-184 651.0 532 68.8
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 2.4e-184 649.8 677 62.9
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 7.1e-184 648.3 533 68.5
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 9.2e-184 647.9 533 68.5
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.1e-183 646.7 530 66.8
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.0e-183 645.2 530 65.1
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 6.0e-183 645.2 521 66.4
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 1.7e-182 643.7 776 59.8
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 3.0e-182 642.9 536 67.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 5.6e-181 638.6 452 71.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 3.6e-180 636.0 428 75.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 4.0e-179 632.5 504 66.1
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.2e-179 632.1 487 69.6
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.2e-179 632.1 543 64.8
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 8.9e-179 631.3 517 62.9
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.4e-178 629.4 526 67.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 4.4e-178 629.0 518 66.8
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.6e-178 628.2 518 65.3
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 9.9e-178 627.9 455 70.5
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.3e-177 627.5 743 61.2
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 3.8e-177 625.9 493 69.6
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.9e-176 623.6 518 66.4
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 2.4e-176 623.2 456 70.4
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 7.8e-175 618.2 545 62.0
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 7.8e-175 618.2 732 61.9
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 8.7e-174 614.8 531 65.0
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 8.7e-174 614.8 404 75.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.5e-173 613.2 746 61.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.6e-172 609.4 529 61.8
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.5e-170 604.0 520 63.1
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.4e-170 602.8 537 63.9
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 4.9e-169 599.0 620 61.0
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.4e-168 596.7 521 65.8
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.2e-167 594.3 532 64.7
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.7e-167 593.2 474 66.9
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.5e-167 592.8 488 66.4
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 6.0e-167 592.0 751 55.0
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.0e-166 591.3 530 60.6
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.0e-166 589.7 727 54.6
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.3e-165 585.9 455 67.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.3e-164 584.3 518 63.7
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 6.2e-164 582.0 545 60.2
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.5e-162 577.4 485 62.1
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 3.4e-162 576.2 419 69.2
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.9e-161 573.2 437 67.3
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.1e-160 571.2 721 58.8
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 5.1e-158 562.4 532 63.2
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 5.1e-158 562.4 400 71.0
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 5.6e-157 558.9 514 60.9
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.1e-155 553.1 514 62.3
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.5e-154 549.3 538 57.6
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 5.5e-152 542.3 725 55.0
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.2e-151 541.2 444 62.8
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 3.9e-150 536.2 373 70.0
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 6.7e-150 535.4 434 62.9
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.0e-146 523.9 452 60.6
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 1.7e-145 520.8 455 61.3
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.7e-140 503.1 526 55.7
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.3e-139 499.2 511 58.9
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 7.7e-138 495.4 564 67.2
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.1e-133 481.5 454 56.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.9e-130 469.2 352 71.0
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.7e-129 467.6 374 63.6
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 8.5e-129 465.3 416 57.7
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.4e-123 447.2 444 55.6
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 8.5e-113 412.1 489 49.1
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 9.4e-112 408.7 320 62.2
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.1e-104 385.2 422 52.4
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.9e-104 384.4 414 51.4
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 4.2e-104 383.3 350 58.0
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 5.2e-102 376.3 370 54.3
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.7e-95 353.2 441 47.6
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.2e-90 338.6 439 49.0
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.6e-89 332.4 214 76.2
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.2e-84 317.8 303 63.7
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.5e-82 310.5 498 42.8
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 5.6e-80 303.1 472 61.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 4.6e-74 283.5 379 44.9
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 3.9e-73 280.4 403 44.2
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.4e-70 271.9 216 65.7
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 1.1e-67 262.3 174 73.6
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.6e-53 214.5 190 58.9
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 8.7e-49 199.5 508 30.9
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 6.9e-46 189.9 217 50.7
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.4e-43 181.4 128 64.8
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 4.3e-40 170.6 190 58.9
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 5.1e-33 147.1 333 54.4
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 1.4e-30 139.0 125 56.8
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.8e-30 138.7 125 57.6
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.4e-29 134.4 365 55.6
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 3.8e-28 131.0 95 66.3
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.3e-24 117.9 88 64.8
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 4.3e-24 117.5 237 34.6
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 2.9e-20 104.8 354 26.3
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.9e-20 104.8 126 52.4
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 6.5e-20 103.6 333 52.3
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.6e-18 97.8 123 48.0
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.1e-14 84.7 164 37.8
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 9.1e-14 83.2 105 47.6
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.5e-13 82.4 132 40.9
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.4e-11 75.9 117 39.3
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 4.2e-11 74.3 44 77.3
Actinidia21715 Actinidia chinensis HOM05D000581 ORTHO05D000412 1.6e-10 72.4 39 87.2
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.1e-08 66.2 118 39.8
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 2.2e-07 62.0 43 72.1


User provided reference genes

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