Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033445 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 3.3e-53 211.5 107 100.0
CSS0035270 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 7.3e-53 210.3 107 99.1
Cpa.g.sc21.108 Carica papaya HOM05D002450 ORTHO05D002953 6.2e-28 127.5 104 69.2
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 5.8e-26 120.9 86 74.4
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 1.7e-25 119.4 83 75.9
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.7e-25 119.4 85 72.9
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 6.4e-25 117.5 85 76.5
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 1.1e-24 116.7 85 71.8
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 3.2e-24 115.2 86 69.8
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 3.2e-24 115.2 86 69.8
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 4.2e-24 114.8 83 72.3
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 5.4e-24 114.4 90 66.7
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 2.1e-23 112.5 86 70.9
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 2.7e-23 112.1 85 69.4
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.0e-22 110.2 85 69.4
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 3.0e-22 108.6 75 76.0
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 3.9e-22 108.2 85 68.2
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 6.7e-22 107.5 85 68.2
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 6.7e-22 107.5 85 68.2
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 8.7e-22 107.1 75 77.3
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 8.7e-22 107.1 85 63.5
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 1.1e-21 106.7 86 66.3
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.1e-21 106.7 79 69.6
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 1.1e-21 106.7 91 68.1
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 1.5e-21 106.3 85 67.1
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 1.9e-21 105.9 92 63.0
Lj4A760T37 Lonicera japonica HOM05D002450 ORTHO05D002953 7.4e-21 104.0 85 64.7
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 9.6e-21 103.6 85 69.4
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 1.6e-20 102.8 85 68.2
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 2.1e-20 102.4 83 67.5
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 2.8e-20 102.1 81 67.9
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 2.8e-20 102.1 75 74.7
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 3.7e-20 101.7 88 64.8
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 3.7e-20 101.7 70 77.1
SalBow1G6445 Salvia bowleyana HOM05D002450 ORTHO05D002953 4.8e-20 101.3 73 71.2
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 6.2e-20 100.9 85 60.0
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 6.2e-20 100.9 74 74.3
MBI14_g43560_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 6.2e-20 100.9 75 69.3
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 8.1e-20 100.5 74 75.7
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 8.1e-20 100.5 75 70.7
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 8.1e-20 100.5 80 71.2
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 8.1e-20 100.5 82 65.9
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 1.1e-19 100.1 82 68.3
Atru.chr9.2196 Acer truncatum HOM05D002450 ORTHO05D002953 1.4e-19 99.8 76 73.7
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 1.8e-19 99.4 83 66.3
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 3.1e-19 98.6 80 68.8
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 3.1e-19 98.6 80 67.5
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 4.0e-19 98.2 85 67.1
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 5.3e-19 97.8 88 62.5
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 6.9e-19 97.4 77 70.1
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 6.9e-19 97.4 72 76.4
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 6.9e-19 97.4 81 67.9
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 9.0e-19 97.1 75 64.0
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 9.0e-19 97.1 75 64.0
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 1.2e-18 96.7 85 65.9
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 1.5e-18 96.3 61 78.7
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 1.5e-18 96.3 83 65.1
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 1.5e-18 96.3 80 65.0
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 2.0e-18 95.9 61 78.7
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 2.0e-18 95.9 61 78.7
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 2.0e-18 95.9 66 77.3
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 2.0e-18 95.9 86 66.3
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 2.6e-18 95.5 74 70.3
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 2.6e-18 95.5 73 71.2
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 2.6e-18 95.5 87 64.4
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 2.6e-18 95.5 88 61.4
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 2.6e-18 95.5 73 69.9
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 2.6e-18 95.5 88 62.5
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 2.6e-18 95.5 71 69.0
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 2.6e-18 95.5 81 67.9
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 3.4e-18 95.1 74 71.6
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 4.5e-18 94.7 93 59.1
Oeu034510.1 Olea europaea HOM05D002450 ORTHO05D002953 5.8e-18 94.4 78 66.7
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 7.6e-18 94.0 79 64.6
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 7.6e-18 94.0 80 66.2
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 9.9e-18 93.6 87 63.2
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.7e-17 92.8 82 62.2
Nitab4.5_0000197g0100 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.7e-17 92.8 85 58.8
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 1.7e-17 92.8 75 70.7
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 1.7e-17 92.8 83 65.1
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 2.2e-17 92.4 75 66.7
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 2.2e-17 92.4 62 75.8
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 3.8e-17 91.7 73 68.5
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.8e-17 91.7 85 65.9
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 4.9e-17 91.3 75 66.7
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 4.9e-17 91.3 86 65.1
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 6.4e-17 90.9 81 64.2
AUR62024687 Chenopodium quinoa HOM05D002450 ORTHO05D002953 6.4e-17 90.9 73 65.8
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 1.1e-16 90.1 77 68.8
CDE04G2133 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.1e-16 90.1 79 62.0
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 1.4e-16 89.7 82 61.0
SEGI_26944 Sequoiadendron giganteum HOM05D002450 ORTHO05D002953 1.4e-16 89.7 85 58.8
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 1.9e-16 89.4 73 65.8
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.9e-16 89.4 85 64.7
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 2.4e-16 89.0 61 77.0
Sc05g0001410 Simmondsia chinensis HOM05D002450 ORTHO05D002953 2.4e-16 89.0 72 66.7
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 3.2e-16 88.6 71 66.2
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 4.2e-16 88.2 86 65.1
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 5.5e-16 87.8 73 63.0
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 7.1e-16 87.4 72 66.7
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 7.1e-16 87.4 82 59.8
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 7.1e-16 87.4 83 59.0
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 9.3e-16 87.0 74 62.2
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 9.3e-16 87.0 72 66.7
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 1.2e-15 86.7 75 65.3
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 1.6e-15 86.3 76 63.2
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.6e-15 86.3 71 64.8
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 2.1e-15 85.9 73 68.5
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.1e-15 85.9 86 62.8
HanXRQChr06g0184031 Helianthus annuus HOM05D002450 ORTHO05D002953 2.1e-15 85.9 74 63.5
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.7e-15 85.5 59 78.0
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 6.0e-15 84.3 61 73.8
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 6.0e-15 84.3 61 73.8
Sc24g0003290 Simmondsia chinensis HOM05D002450 ORTHO05D002953 1.8e-14 82.8 73 64.4
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 2.3e-14 82.4 86 54.7
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 3.0e-14 82.0 61 70.5
HPP92_026568 Vanilla planifolia HOM05D002450 ORTHO05D002953 3.0e-14 82.0 77 59.7
Thecc.01G353600 Theobroma cacao HOM05D002450 ORTHO05D002953 3.9e-14 81.6 61 68.9
EL10As5g23491 Beta vulgaris HOM05D002450 ORTHO05D002953 5.1e-14 81.3 84 58.3
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 1.1e-13 80.1 81 56.8
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 1.1e-13 80.1 65 66.2
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 1.5e-13 79.7 61 67.2
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 1.5e-13 79.7 61 67.2
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 1.5e-13 79.7 61 67.2
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 1.9e-13 79.3 80 63.8
Medtr3g102840 Medicago truncatula HOM05D002450 ORTHO05D002953 1.9e-13 79.3 66 66.7
Ah.07g199510 Amaranthus hybridus HOM05D002450 ORTHO05D002953 2.5e-13 79.0 73 64.4
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 2.5e-13 79.0 81 55.6
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 2.5e-13 79.0 80 57.5
AT1G27720 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 5.6e-13 77.8 70 60.0
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 5.6e-13 77.8 85 54.1
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 2.1e-12 75.9 61 72.1
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 2.1e-12 75.9 61 72.1
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 2.1e-12 75.9 61 72.1
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 2.8e-12 75.5 82 54.9
CARHR027220 Cardamine hirsuta HOM05D002450 ORTHO05D002953 2.8e-12 75.5 70 58.6
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 2.8e-12 75.5 76 57.9
SHI19397 Sapria himalayana HOM05D002450 ORTHO05D002953 2.8e-12 75.5 74 59.5
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 6.2e-12 74.3 79 57.0
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 1.1e-11 73.6 61 63.9
C04p24690 Brassica napus HOM05D002450 ORTHO05D002953 1.1e-11 73.6 59 66.1
BolC4t23974H Brassica oleracea HOM05D002450 ORTHO05D002953 1.1e-11 73.6 59 66.1
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 1.8e-11 72.8 74 58.1
AL1G41250 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 2.4e-11 72.4 65 58.5
MD03G1150900 Malus domestica HOM05D002450 ORTHO05D002953 2.4e-11 72.4 67 61.2
Sp1g23950 Schrenkiella parvula HOM05D002450 ORTHO05D002953 2.4e-11 72.4 58 67.2
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 4.0e-11 71.6 82 53.7
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 5.3e-11 71.2 68 60.3
Thhalv10009915m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 1.5e-10 69.7 84 50.0
HanXRQChr09g0266561 Helianthus annuus HOM05D002450 ORTHO05D002953 2.0e-10 69.3 61 63.9
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 2.0e-10 69.3 53 67.9
arahy.Tifrunner.gnm1.ann1.XWQ1KT Arachis hypogaea HOM05D002450 ORTHO05D002953 2.6e-10 68.9 81 50.6
ECA232G4759 Erigeron canadensis HOM05D002450 ORTHO05D002953 2.6e-10 68.9 70 60.0
Carub.0001s2623 Capsella rubella HOM05D002450 ORTHO05D002953 3.4e-10 68.6 80 52.5
HanXRQChr17g0568561 Helianthus annuus HOM05D002450 ORTHO05D002953 4.5e-10 68.2 86 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2387 Anthoceros agrestis HOM05D002450 ORTHO05D002953 5.8e-10 67.8 67 59.7
HanXRQChr17g0568081 Helianthus annuus HOM05D002450 ORTHO05D002953 5.8e-10 67.8 86 52.3
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 1.3e-09 66.6 82 50.0
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 1.3e-09 66.6 80 52.5
Zm00001eb020720 Zea mays HOM05D002450 ORTHO05D002953 1.3e-09 66.6 88 46.6
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 1.7e-09 66.2 76 52.6
HPP92_012495 Vanilla planifolia HOM05D002450 ORTHO05D002953 3.8e-09 65.1 65 60.0
RcHm_v2.0_Chr1g0327781 Rosa chinensis HOM05D002450 ORTHO05D002953 4.9e-09 64.7 86 50.0
Dinv15791 Davidia involucrata HOM05D002450 ORTHO05D002953 8.4e-09 63.9 82 46.3
Mapoly0015s0206 Marchantia polymorpha HOM05D002450 ORTHO05D002953 1.4e-08 63.2 80 53.8
HanXRQChr17g0568431 Helianthus annuus HOM05D002450 ORTHO05D002953 1.9e-08 62.8 85 49.4
Zm00001eb123350 Zea mays HOM05D002450 ORTHO05D002953 9.3e-08 60.5 89 46.1
PGR031G1138 Punica granatum HOM05D002450 ORTHO05D002953 2.7e-07 58.9 72 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1787 Anthoceros agrestis HOM05D002450 ORTHO05D002953 1.0e-06 57.0 69 55.1
MBI15_g46857_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 1.8e-06 56.2 67 47.8
COL.COLO4_12766 Corchorus olitorius HOM05D002450 ORTHO05D002953 6.7e-06 54.3 64 54.7


User provided reference genes

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