Gene: AT1G27720

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G27720
  • Transcript Identifier AT1G27720.5
  • Gene Type Coding gene
  • Location Chr1 : 9643351-9646798 : negative

Gene Family Information

  • ID HOM05D002450
  • #Genes/#Species 278/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G27720.5
  • symbol TAF4B
  • Alias TAF4,TBP-associated factor 4
  • uniprot Q6SJR1

Descriptions

  • Description TBP-associated factor 4B
  • Computational description TBP-associated factor 4B (TAF4B); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4 (TAIR:AT5G43130.1); Has 801 Blast hits to 726 proteins in 155 species: Archae - 1; Bacteria - 21; Metazoa - 244; Fungi - 130; Plants - 81; Viruses - 2; Other Eukaryotes - 322 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
Gene OntologyDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006367
IBA
Gene Ontologytranscription initiation from RNA polymerase II promoter1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
IEA
Gene Ontologyprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0003677
IBA
Gene OntologyDNA binding1
GO:0016251
IBA
Gene OntologyRNA polymerase II general transcription initiation factor activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005669
IBA
IEA
Gene Ontologytranscription factor TFIID complex1
GO:0005669
IEA
InterProtranscription factor TFIID complex
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007900 Transcription initiation factor TFIID component TAF4, C-terminal
IPR009072 Histone-fold
IPR022003 RST domain
IPR045144 Transcription initiation factor TFIID component TAF4
Mapman id Description
15.3.4.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF4