Gene: AT5G43130

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G43130
  • Transcript Identifier AT5G43130.3
  • Gene Type Coding gene
  • Location Chr5 : 17315874-17321144 : negative

Gene Family Information

  • ID HOM05D002450
  • #Genes/#Species 278/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G43130.3
  • symbol TAF4
  • Alias TAF4B,TBP-associated factor 4B
  • uniprot F4K4L7

Descriptions

  • Description TBP-associated factor 4
  • Computational description TBP-associated factor 4 (TAF4); FUNCTIONS IN: transcription initiation factor activity; INVOLVED IN: transcription initiation; LOCATED IN: transcription factor TFIID complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID component TAF4 (InterPro:IPR007900), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: TBP-associated factor 4B (TAIR:AT1G27720.1); Has 4202 Blast hits to 2039 proteins in 267 species: Archae - 5; Bacteria - 117; Metazoa - 912; Fungi - 374; Plants - 141; Viruses - 12; Other Eukaryotes - 2641 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
Gene OntologyDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006367
IBA
Gene Ontologytranscription initiation from RNA polymerase II promoter1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
IEA
Gene Ontologyprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0003677
IBA
Gene OntologyDNA binding1
GO:0016251
IBA
Gene OntologyRNA polymerase II general transcription initiation factor activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005669
IBA
IEA
Gene Ontologytranscription factor TFIID complex1
GO:0005669
IEA
InterProtranscription factor TFIID complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR022003 RST domain
IPR045144 Transcription initiation factor TFIID component TAF4
IPR007900 Transcription initiation factor TFIID component TAF4, C-terminal
IPR009072 Histone-fold
Mapman id Description
15.3.4.2.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.TFIId complex.component TAF4