Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033326 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D109341 6.7e-89 330.5 149 100.0
CSS0045011 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D111361 1.5e-59 233.0 167 69.5
CSS0046167 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D002812 4.0e-17 92.0 49 85.7
Actinidia08951 Actinidia chinensis HOM05D002499 ORTHO05D002812 2.9e-15 85.9 49 75.5
CSS0036691 Camellia sinensis var. sinensis HOM05D002499 ORTHO05D002812 6.4e-15 84.7 49 77.6
Dinv23317 Davidia involucrata HOM05D002499 ORTHO05D002812 1.1e-14 84.0 49 77.6
GSVIVG01013625001 Vitis vinifera HOM05D002499 ORTHO05D002812 4.2e-14 82.0 49 75.5
Rhsim12G0188800 Rhododendron simsii HOM05D001993 ORTHO05D009037 3.5e-13 79.0 49 75.5
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 1.0e-12 77.4 89 48.3
TAR625G0939 Trochodendron aralioides HOM05D002499 ORTHO05D002812 1.0e-12 77.4 49 73.5
vmacro16869 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 1.0e-12 77.4 49 75.5
vmacro17297 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 1.0e-12 77.4 49 75.5
Nitab4.5_0004227g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 3.9e-12 75.5 49 71.4
QL05p033830 Quercus lobata HOM05D002499 ORTHO05D002812 3.9e-12 75.5 49 71.4
Lalb_Chr22g0350771 Lupinus albus HOM05D002499 ORTHO05D002812 6.7e-12 74.7 73 56.2
Hund06540 Selenicereus undatus HOM05D002499 ORTHO05D002812 1.1e-11 73.9 49 69.4
Haze_16626 Corylus avellana HOM05D002499 ORTHO05D002812 1.5e-11 73.6 49 71.4
Haze_16629 Corylus avellana HOM05D002499 ORTHO05D002812 1.5e-11 73.6 49 71.4
Lalb_Chr14g0373931 Lupinus albus HOM05D002499 ORTHO05D002812 1.5e-11 73.6 73 56.2
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 1.5e-11 73.6 89 46.1
EL10Ac2g03135 Beta vulgaris HOM05D002499 ORTHO05D002812 1.9e-11 73.2 49 67.3
AUR62016599 Chenopodium quinoa HOM05D002499 ORTHO05D002812 1.9e-11 73.2 49 67.3
DCAR_021361 Daucus carota HOM05D002499 ORTHO05D002812 1.9e-11 73.2 47 70.2
Atru.chr1.1502 Acer truncatum HOM05D002499 ORTHO05D002812 2.5e-11 72.8 49 69.4
Aqoxy3G01317 Aquilegia oxysepala HOM05D002499 ORTHO05D002812 2.5e-11 72.8 49 69.4
Thecc.06G035800 Theobroma cacao HOM05D002499 ORTHO05D002812 2.5e-11 72.8 49 69.4
HPP92_005343 Vanilla planifolia HOM05D002499 ORTHO05D002812 2.5e-11 72.8 49 67.3
Manes.04G106600 Manihot esculenta HOM05D002499 ORTHO05D002812 4.3e-11 72.0 49 67.3
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 5.6e-11 71.6 89 44.9
Cfa001916 Carpinus fangiana HOM05D002499 ORTHO05D002812 5.6e-11 71.6 49 69.4
Lj9C496G12 Lonicera japonica HOM05D002499 ORTHO05D002812 5.6e-11 71.6 49 71.4
Phvul.005G181500 Phaseolus vulgaris HOM05D002499 ORTHO05D002812 5.6e-11 71.6 73 56.2
CDE02G4653 Ceratophyllum demersum HOM05D002499 ORTHO05D002812 7.4e-11 71.2 49 63.3
Psat5g304000 Pisum sativum HOM05D002499 ORTHO05D002812 7.4e-11 71.2 64 57.8
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 7.4e-11 71.2 89 46.1
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 7.4e-11 71.2 89 46.1
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 7.4e-11 71.2 89 46.1
Duzib235G1396 Durio zibethinus HOM05D002499 ORTHO05D002812 9.6e-11 70.9 47 70.2
Gohir.D05G122300 Gossypium hirsutum HOM05D002499 ORTHO05D002812 9.6e-11 70.9 49 67.3
Gorai.009G125800 Gossypium raimondii HOM05D002499 ORTHO05D002812 9.6e-11 70.9 49 67.3
TPR.G29606 Trifolium pratense HOM05D002499 ORTHO05D002812 9.6e-11 70.9 64 57.8
arahy.Tifrunner.gnm1.ann1.K5UKEJ Arachis hypogaea HOM05D002499 ORTHO05D002812 1.3e-10 70.5 96 43.8
Cpa.g.sc10.127 Carica papaya HOM05D002499 ORTHO05D002812 1.3e-10 70.5 49 69.4
Glyma.15G005300 Glycine max HOM05D002499 ORTHO05D002812 1.3e-10 70.5 73 53.4
Gohir.A05G121300 Gossypium hirsutum HOM05D002499 ORTHO05D002812 1.3e-10 70.5 49 65.3
Sc12g0008570 Simmondsia chinensis HOM05D002499 ORTHO05D002812 1.3e-10 70.5 49 65.3
Sc12g0009010 Simmondsia chinensis HOM05D002499 ORTHO05D002812 1.3e-10 70.5 49 65.3
Potri.005G110500 Populus trichocarpa HOM05D002499 ORTHO05D002812 1.6e-10 70.1 49 69.4
VMungo1080G0657 Vigna mungo HOM05D002499 ORTHO05D002812 1.6e-10 70.1 73 54.8
COL.COLO4_25125 Corchorus olitorius HOM05D002499 ORTHO05D002812 2.1e-10 69.7 49 63.3
vmacro17298 Vaccinium macrocarpon HOM05D002499 ORTHO05D002812 2.1e-10 69.7 50 68.0
Lj3g0010501 Lotus japonicus HOM05D002499 ORTHO05D002812 2.8e-10 69.3 73 53.4
arahy.Tifrunner.gnm1.ann1.PQEG92 Arachis hypogaea HOM05D002499 ORTHO05D002812 3.7e-10 68.9 73 52.1
Ca_01032_v3 Cicer arietinum L. HOM05D002499 ORTHO05D002812 3.7e-10 68.9 62 58.1
arahy.Tifrunner.gnm1.ann1.50IW82 Arachis hypogaea HOM05D002499 ORTHO05D002812 4.8e-10 68.6 49 67.3
arahy.Tifrunner.gnm1.ann1.PLPE7Z Arachis hypogaea HOM05D002499 ORTHO05D002812 4.8e-10 68.6 49 67.3
ClCG09G003160 Citrullus lanatus HOM05D002499 ORTHO05D002812 4.8e-10 68.6 49 67.3
MELO3C023451.2 Cucumis melo HOM05D002499 ORTHO05D002812 6.2e-10 68.2 49 67.3
CsaV3_7G032060 Cucumis sativus L. HOM05D002499 ORTHO05D002812 6.2e-10 68.2 49 67.3
Nn2g12223 Nelumbo nucifera HOM05D002499 ORTHO05D002812 6.2e-10 68.2 49 67.3
Cc11_g03280 Coffea canephora HOM05D002499 ORTHO05D002812 1.4e-09 67.0 49 59.2
arahy.Tifrunner.gnm1.ann1.K6DZ42 Arachis hypogaea HOM05D002499 ORTHO05D002812 1.8e-09 66.6 49 65.3
Ciclev10025428m.g Citrus clementina HOM05D002499 ORTHO05D002812 1.8e-09 66.6 49 63.3
Eucgr.F02255 Eucalyptus grandis HOM05D002499 ORTHO05D002812 1.8e-09 66.6 49 63.3
CiPaw.01G251600 Carya illinoinensis HOM05D002499 ORTHO05D002812 3.1e-09 65.9 49 67.3
Sed0027441 Sechium edule HOM05D002499 ORTHO05D002812 3.1e-09 65.9 49 65.3
SEGI_24500 Sequoiadendron giganteum HOM05D002499 ORTHO05D002812 3.1e-09 65.9 49 63.3
ATR0800G174 Amborella trichopoda HOM05D002499 ORTHO05D002812 4.0e-09 65.5 49 65.3
SGA_v2.0_scaffold117G32333 Striga asiatica HOM05D002499 ORTHO05D002812 6.9e-09 64.7 51 56.9
Lsat_1_v5_gn_5_7901 Lactuca sativa HOM05D002499 ORTHO05D002812 9.0e-09 64.3 49 65.3
Sabra05G0090600 Salix brachista HOM05D002499 ORTHO05D002812 9.0e-09 64.3 49 65.3
ATR0767G236 Amborella trichopoda HOM05D002499 ORTHO05D002812 1.2e-08 63.9 49 67.3
HanXRQChr05g0140801 Helianthus annuus HOM05D002499 ORTHO05D002812 1.2e-08 63.9 49 65.3
FAN09G4839 Fragaria x ananassa HOM05D002499 ORTHO05D002812 2.0e-08 63.2 49 63.3
RcHm_v2.0_Chr2g0133711 Rosa chinensis HOM05D002499 ORTHO05D002812 2.0e-08 63.2 49 63.3
FvH4_6g29040 Fragaria vesca HOM05D002499 ORTHO05D002812 5.8e-08 61.6 49 63.3
FAN14G1678 Fragaria x ananassa HOM05D002499 ORTHO05D002812 5.8e-08 61.6 49 63.3
Migut.D01091 Erythranthe guttata HOM05D002499 ORTHO05D002812 7.6e-08 61.2 49 59.2
Medtr2g104600 Medicago truncatula HOM05D002499 ORTHO05D002812 7.6e-08 61.2 60 58.3
Potri.007G063900 Populus trichocarpa HOM05D002499 ORTHO05D002812 1.3e-07 60.5 49 65.3
AT2G26000 Arabidopsis thaliana HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
BcaB05g25257 Brassica carinata HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
BcaC03g15952 Brassica carinata HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
A02p23440 Brassica napus HOM05D002499 ORTHO05D009037 1.7e-07 60.1 49 61.2
C02p37140 Brassica napus HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
BolC2t09726H Brassica oleracea HOM05D001993 ORTHO05D009037 1.7e-07 60.1 49 61.2
BraA02t07336Z Brassica rapa HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
Carub.0002s2698 Capsella rubella HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
Thhalv10018494m.g Eutrema salsugineum HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
PSO017G4237 Papaver somniferum HOM05D002499 ORTHO05D002812 1.7e-07 60.1 93 43.0
PSO170G6815 Papaver somniferum HOM05D002499 ORTHO05D002812 1.7e-07 60.1 93 43.0
Sp5g35210 Schrenkiella parvula HOM05D002499 ORTHO05D002812 1.7e-07 60.1 49 61.2
Atru.chr7.1114 Acer truncatum HOM05D002499 ORTHO05D002812 2.2e-07 59.7 49 57.1
Oeu005939.1 Olea europaea HOM05D002499 ORTHO05D002812 2.9e-07 59.3 42 64.3
Ciclev10008137m.g Citrus clementina HOM05D002499 ORTHO05D002812 3.8e-07 58.9 49 57.1
THA.LOC104812453 Tarenaya hassleriana HOM05D002499 ORTHO05D002812 3.8e-07 58.9 49 61.2
CARHR125340 Cardamine hirsuta HOM05D002499 ORTHO05D002812 4.9e-07 58.5 49 61.2
TWI12G0474 Tripterygium wilfordii HOM05D002499 ORTHO05D002812 4.9e-07 58.5 49 59.2
CANSAT11G0323 Cannabis sativa HOM05D002499 ORTHO05D002812 6.4e-07 58.2 49 57.1
Eucgr.C01353 Eucalyptus grandis HOM05D002499 ORTHO05D002812 6.4e-07 58.2 49 55.1
Eucgr.C01425 Eucalyptus grandis HOM05D002499 ORTHO05D002812 6.4e-07 58.2 49 55.1
Eucgr.C01440 Eucalyptus grandis HOM05D002499 ORTHO05D002812 6.4e-07 58.2 49 55.1
ECA246G0812 Erigeron canadensis HOM05D002499 ORTHO05D002812 8.4e-07 57.8 49 61.2
Eucgr.C01348 Eucalyptus grandis HOM05D002499 ORTHO05D002812 8.4e-07 57.8 49 55.1
Eucgr.C01400 Eucalyptus grandis HOM05D002499 ORTHO05D002812 8.4e-07 57.8 49 55.1
Eucgr.C01410 Eucalyptus grandis HOM05D002499 ORTHO05D002812 8.4e-07 57.8 49 55.1
Prupe.3G094400 Prunus persica HOM05D002499 ORTHO05D002812 8.4e-07 57.8 50 64.0
Eucgr.C01428 Eucalyptus grandis HOM05D002499 ORTHO05D002812 1.1e-06 57.4 49 53.1
MBI11_g31278_MAGBIO Magnolia biondii HOM05D002499 ORTHO05D002812 1.1e-06 57.4 49 57.1
SHI13319 Sapria himalayana HOM05D002499 ORTHO05D002812 1.1e-06 57.4 49 57.1
AL2G40890 Arabidopsis lyrata HOM05D002499 ORTHO05D002812 1.4e-06 57.0 49 59.2
Aa31LG4G840 Aethionema arabicum HOM05D002499 ORTHO05D004040 1.9e-06 56.6 49 61.2
Duzib168G1186 Durio zibethinus HOM05D002499 ORTHO05D002812 1.9e-06 56.6 49 53.1
Potri.018G128100 Populus trichocarpa HOM05D002499 ORTHO05D002812 1.9e-06 56.6 49 53.1
Sabra18G0108900 Salix brachista HOM05D002499 ORTHO05D002812 1.9e-06 56.6 49 53.1
CiPaw.04G173800 Carya illinoinensis HOM05D002499 ORTHO05D002812 2.4e-06 56.2 49 53.1
Os02g0182900 Oryza sativa ssp. japonica HOM05D002499 ORTHO05D002812 3.2e-06 55.8 50 60.0
Sed0022185 Sechium edule HOM05D002499 ORTHO05D002812 4.2e-06 55.5 49 51.0
SMO364G0011 Selaginella moellendorffii HOM05D002499 ORTHO05D002812 4.2e-06 55.5 49 59.2
Haze_25532 Corylus avellana HOM05D002499 ORTHO05D002812 5.5e-06 55.1 49 51.0
Haze_25537 Corylus avellana HOM05D002499 ORTHO05D002812 5.5e-06 55.1 49 51.0
Mapoly0006s0136 Marchantia polymorpha HOM05D002499 ORTHO05D002812 5.5e-06 55.1 79 43.0
TAR625G0500 Trochodendron aralioides HOM05D002499 ORTHO05D002812 5.5e-06 55.1 49 55.1
Eucgr.C01302 Eucalyptus grandis HOM05D002499 ORTHO05D002812 7.1e-06 54.7 49 53.1
Eucgr.C01405 Eucalyptus grandis HOM05D002499 ORTHO05D002812 7.1e-06 54.7 49 53.1
Thecc.09G130200 Theobroma cacao HOM05D002499 ORTHO05D002812 7.1e-06 54.7 49 51.0
Aa31LG5G9190 Aethionema arabicum HOM05D002499 ORTHO05D002812 9.3e-06 54.3 46 56.5
EL10Ac7g16523 Beta vulgaris HOM05D002499 ORTHO05D002812 9.3e-06 54.3 40 60.0
BraA06t25941Z Brassica rapa HOM05D002499 ORTHO05D002812 9.3e-06 54.3 46 56.5
Cfa003408 Carpinus fangiana HOM05D002499 ORTHO05D002812 9.3e-06 54.3 49 51.0


User provided reference genes

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