Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033238 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 3.2e-84 315.1 163 100.0
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 5.3e-79 297.7 159 96.9
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.3e-76 287.0 159 93.1
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 6.1e-75 284.3 159 91.8
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 2.5e-73 278.9 158 90.5
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 2.5e-73 278.9 158 90.5
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.7e-69 266.2 161 85.7
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 3.8e-69 265.0 160 85.6
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 8.8e-66 253.8 160 80.0
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.5e-65 253.1 160 79.4
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 3.7e-64 248.4 160 78.1
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 1.1e-63 246.9 163 77.3
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.4e-62 241.9 158 79.1
Dinv04117 Davidia involucrata HOM05D003084 ORTHO05D003580 4.5e-62 241.5 162 76.5
CSS0000201 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 7.7e-62 240.7 155 84.5
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.7e-61 239.6 159 79.2
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 1.1e-60 236.9 159 79.2
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 2.7e-59 232.3 159 75.5
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.0e-58 230.3 160 75.0
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 1.4e-58 229.9 155 75.5
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 1.8e-58 229.6 159 73.6
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.8e-58 229.6 159 73.6
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 3.0e-58 228.8 162 73.5
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 2.6e-57 225.7 157 75.8
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 7.4e-57 224.2 159 70.4
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 7.4e-57 224.2 159 71.1
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.3e-56 223.4 164 69.5
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 1.3e-56 223.4 159 70.4
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.8e-56 222.2 161 72.7
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 2.8e-56 222.2 161 72.7
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 2.8e-56 222.2 149 76.5
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 2.8e-56 222.2 157 73.9
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 4.8e-56 221.5 157 70.1
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.8e-56 221.5 159 74.2
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.3e-56 221.1 158 74.7
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.1e-55 220.3 161 69.6
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 7.0e-55 217.6 157 71.3
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 7.0e-55 217.6 150 74.0
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 7.0e-55 217.6 157 72.6
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 7.0e-55 217.6 162 71.0
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 9.1e-55 217.2 163 71.2
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 9.1e-55 217.2 163 71.2
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.2e-54 216.9 163 69.9
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.2e-54 216.9 158 70.9
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.2e-54 216.9 157 71.3
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 1.5e-54 216.5 150 73.3
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.5e-54 216.5 157 70.7
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 2.0e-54 216.1 155 74.8
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 2.6e-54 215.7 159 69.8
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 2.6e-54 215.7 157 70.7
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 5.9e-54 214.5 161 73.9
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 5.9e-54 214.5 159 69.2
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 5.9e-54 214.5 162 67.3
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 7.7e-54 214.2 159 69.8
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 7.7e-54 214.2 157 70.1
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 7.7e-54 214.2 157 70.1
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.0e-53 213.8 161 70.2
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 1.7e-53 213.0 156 72.4
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 3.8e-53 211.8 158 71.5
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 8.5e-53 210.7 159 69.8
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 8.5e-53 210.7 162 69.1
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.1e-52 210.3 161 68.9
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 1.5e-52 209.9 154 67.5
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 1.9e-52 209.5 159 68.6
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.2e-52 208.8 154 66.9
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.5e-52 208.0 157 72.6
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.5e-52 208.0 157 72.6
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 5.5e-52 208.0 160 67.5
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 7.2e-52 207.6 164 70.1
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 7.2e-52 207.6 153 70.6
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 1.2e-51 206.8 156 67.3
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.2e-51 206.8 159 69.8
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.2e-51 206.8 159 69.8
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.6e-51 206.5 155 66.5
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.7e-51 205.7 154 66.2
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.0e-50 203.8 154 65.6
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 1.4e-50 203.4 152 71.7
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.3e-50 202.6 157 69.4
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 6.7e-50 201.1 146 68.5
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 8.8e-50 200.7 157 68.2
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 3.3e-49 198.7 156 67.9
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 7.4e-49 197.6 159 64.2
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 7.4e-49 197.6 156 67.3
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 7.4e-49 197.6 158 67.1
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.7e-48 196.4 158 66.5
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 4.8e-48 194.9 157 66.2
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 1.8e-47 193.0 159 65.4
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 4.1e-47 191.8 158 66.5
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 4.1e-47 191.8 158 66.5
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 7.0e-47 191.0 145 71.7
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 9.1e-47 190.7 147 70.7
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 2.6e-46 189.1 160 63.8
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.5e-44 183.3 146 63.7
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.9e-44 183.0 164 62.2
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 2.5e-44 182.6 149 61.7
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 3.2e-44 182.2 159 66.0
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 4.2e-44 181.8 156 60.9
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 4.2e-44 181.8 168 60.7
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 1.6e-43 179.9 159 60.4
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 6.1e-43 177.9 160 61.2
Actinidia38788 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.0e-42 177.2 159 65.4
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 1.0e-42 177.2 158 60.8
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 1.8e-42 176.4 157 62.4
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 1.8e-42 176.4 158 60.1
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 8.8e-42 174.1 148 62.2
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 1.2e-41 173.7 161 59.6
BcaB04g19962 Brassica carinata HOM05D003084 ORTHO05D003580 1.5e-41 173.3 160 60.6
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 2.6e-41 172.6 160 60.6
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 2.6e-41 172.6 160 60.6
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.6e-41 172.6 158 57.6
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 2.6e-41 172.6 160 60.0
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 4.4e-41 171.8 160 60.6
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 5.7e-41 171.4 161 60.2
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.1e-39 167.2 160 58.8
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.4e-39 166.8 157 60.5
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.8e-39 166.4 160 58.1
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 2.4e-39 166.0 160 58.1
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 4.1e-39 165.2 149 63.8
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 5.9e-38 161.4 159 57.2
Rhsim04G0090100 Rhododendron simsii HOM05D003084 ORTHO05D003580 2.2e-37 159.5 184 53.3
Sc25g0002420 Simmondsia chinensis HOM05D003084 ORTHO05D003580 2.9e-37 159.1 143 65.0
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 8.5e-37 157.5 165 57.0
Rhsim04G0095500 Rhododendron simsii HOM05D003084 ORTHO05D003580 8.5e-37 157.5 184 52.7
C03p62010 Brassica napus HOM05D003084 ORTHO05D003580 1.9e-36 156.4 164 56.7
FvH4_4g00110 Fragaria vesca HOM05D003084 ORTHO05D003580 2.5e-36 156.0 121 62.0
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 3.2e-36 155.6 163 57.1
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 7.2e-36 154.5 163 56.4
Rhsim04G0092700 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.6e-35 152.1 162 58.0
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.7e-35 151.8 162 50.6
Os02g0147300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.4e-34 150.2 174 51.7
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 1.4e-34 150.2 170 51.2
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 5.2e-34 148.3 136 57.4
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 6.8e-34 147.9 172 51.2
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 2.6e-33 146.0 164 51.2
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 9.8e-33 144.1 162 53.7
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 9.1e-31 137.5 100 73.0
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea HOM05D003084 ORTHO05D003580 1.7e-29 133.3 120 60.8
Oeu052036.1 Olea europaea HOM05D003084 ORTHO05D003580 6.6e-29 131.3 107 59.8
RhsimUnG0029100 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.3e-28 129.0 168 49.4
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 3.4e-25 119.0 162 48.1
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.2e-24 116.3 155 47.1
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.6e-22 110.2 140 43.6
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 2.0e-22 109.8 140 43.6
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 5.0e-21 105.1 109 52.3
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 8.6e-21 104.4 73 72.6
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 8.6e-21 104.4 137 47.4
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 5.6e-20 101.7 147 41.5
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.1e-10 70.9 134 39.6
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.5e-09 67.0 123 37.4
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 8.3e-08 61.2 81 45.7
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 5.4e-07 58.5 98 36.7
Medtr2g009090 Medicago truncatula HOM05D003084 ORTHO05D003580 9.2e-07 57.8 57 56.1


User provided reference genes

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