Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.8e-73 278.5 137 100.0
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.5e-21 104.8 85 62.4
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 6.1e-20 101.3 58 81.0
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.0e-19 100.5 60 78.3
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.3e-19 99.4 61 77.0
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.3e-19 99.4 58 79.3
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 3.0e-19 99.0 60 78.3
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 3.0e-19 99.0 59 83.1
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 3.0e-19 99.0 58 81.0
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 4.0e-19 98.6 58 79.3
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 5.2e-19 98.2 58 81.0
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 6.8e-19 97.8 58 82.8
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 6.8e-19 97.8 58 77.6
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 6.8e-19 97.8 58 77.6
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 6.8e-19 97.8 58 77.6
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 8.8e-19 97.4 58 79.3
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 8.8e-19 97.4 58 77.6
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.2e-18 97.1 58 82.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-18 97.1 58 77.6
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-18 97.1 62 74.2
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.2e-18 97.1 58 77.6
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.5e-18 96.7 58 77.6
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 2.6e-18 95.9 58 74.1
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.6e-18 95.9 58 81.0
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 3.4e-18 95.5 58 74.1
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 4.4e-18 95.1 58 81.0
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 7.5e-18 94.4 65 69.2
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 7.5e-18 94.4 65 69.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 7.5e-18 94.4 65 69.2
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 7.5e-18 94.4 58 70.7
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 9.7e-18 94.0 61 73.8
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 9.7e-18 94.0 63 73.0
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 9.7e-18 94.0 58 77.6
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.3e-17 93.6 58 77.6
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.3e-17 93.6 58 77.6
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.3e-17 93.6 58 74.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.7e-17 93.2 58 79.3
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 1.7e-17 93.2 60 70.0
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-17 93.2 58 70.7
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-17 93.2 58 70.7
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.7e-17 93.2 58 70.7
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.7e-17 93.2 60 68.3
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.2e-17 92.8 58 75.9
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.2e-17 92.8 58 75.9
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 2.2e-17 92.8 58 75.9
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.2e-17 92.8 58 75.9
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.2e-17 92.8 60 68.3
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 3.7e-17 92.0 58 70.7
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 3.7e-17 92.0 58 74.1
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 3.7e-17 92.0 59 74.6
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 3.7e-17 92.0 60 73.3
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 3.7e-17 92.0 58 72.4
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 4.8e-17 91.7 65 66.2
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 4.8e-17 91.7 86 55.8
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.8e-17 91.7 58 69.0
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 4.8e-17 91.7 58 74.1
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.8e-17 91.7 58 74.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 8.3e-17 90.9 58 74.1
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.8e-16 89.7 58 77.6
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.8e-16 89.7 68 66.2
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 1.8e-16 89.7 60 70.0
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 2.4e-16 89.4 75 58.7
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.4e-16 89.4 58 72.4
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.1e-16 89.0 60 66.7
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 5.3e-16 88.2 58 69.0
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.3e-16 88.2 58 69.0
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.3e-16 88.2 58 69.0
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.3e-16 88.2 58 69.0
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.0e-16 87.8 58 67.2
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 7.0e-16 87.8 58 69.0
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 9.1e-16 87.4 58 70.7
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 9.1e-16 87.4 60 65.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.2e-15 87.0 58 72.4
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.6e-15 86.7 58 67.2
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.0e-15 86.3 58 67.2
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 2.0e-15 86.3 58 67.2
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.0e-15 86.3 59 69.5
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.7e-15 85.9 60 66.7
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 3.5e-15 85.5 60 65.0
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 3.5e-15 85.5 73 58.9
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 3.5e-15 85.5 60 70.0
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 3.5e-15 85.5 58 72.4
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.5e-15 85.5 58 69.0
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.5e-15 85.5 60 70.0
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 4.5e-15 85.1 60 68.3
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 4.5e-15 85.1 60 63.3
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 5.9e-15 84.7 60 65.0
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 5.9e-15 84.7 59 69.5
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 7.7e-15 84.3 65 63.1
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 7.7e-15 84.3 58 69.0
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.0e-14 84.0 63 65.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.3e-14 83.6 60 68.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.7e-14 83.2 62 62.9
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.7e-14 83.2 60 65.0
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.2e-14 82.8 62 62.9
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.9e-14 82.4 59 67.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 2.9e-14 82.4 60 63.3
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.8e-14 82.0 48 77.1
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 5.0e-14 81.6 48 77.1
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.5e-14 81.3 60 70.0
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 6.5e-14 81.3 60 66.7
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 6.5e-14 81.3 60 66.7
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 8.5e-14 80.9 60 66.7
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 8.5e-14 80.9 60 66.7
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 8.5e-14 80.9 60 66.7
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.5e-13 80.1 60 66.7
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.5e-13 80.1 58 60.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.5e-13 80.1 58 60.3
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.5e-13 80.1 60 65.0
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.9e-13 79.7 61 65.6
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.9e-13 79.7 60 68.3
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.9e-13 79.7 62 64.5
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 2.5e-13 79.3 48 72.9
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 2.5e-13 79.3 58 63.8
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.2e-13 78.6 61 67.2
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 5.5e-13 78.2 60 63.3
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.2e-12 77.0 60 63.3
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.2e-12 77.0 60 66.7
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-12 77.0 60 65.0
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.7e-12 75.9 60 61.7
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 8.0e-12 74.3 60 61.7
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.0e-11 73.9 60 60.0
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.0e-11 73.9 60 60.0
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.0e-11 73.9 60 63.3
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.0e-11 72.4 62 58.1
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.2e-11 71.6 44 75.0
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.5e-10 70.1 44 72.7
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.6e-10 69.3 60 51.7
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 7.5e-10 67.8 54 57.4
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.3e-09 64.7 58 53.4
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 8.3e-09 64.3 61 49.2
CSS0033313 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-07 59.7 91 34.1
Prupe.1G572100 Prunus persica HOM05D000003 ORTHO05D000004 4.5e-07 58.5 87 37.9
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 5.9e-07 58.2 45 62.2
CSS0043417 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.8e-06 55.5 92 33.7
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 5.0e-06 55.1 58 55.2


User provided reference genes

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