Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032985 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D112895 1.3e-27 125.6 60 100.0
CSS0005977 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.5e-15 85.5 86 57.0
CSS0020466 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D005649 1.5e-15 85.5 86 57.0
CSS0046398 Camellia sinensis var. sinensis HOM05D004105 ORTHO05D030951 1.7e-14 82.0 75 65.3
Actinidia36827 Actinidia chinensis HOM05D004105 ORTHO05D030951 6.4e-14 80.1 86 53.5
MD06G1136900 Malus domestica HOM05D004105 ORTHO05D005649 6.4e-14 80.1 86 53.5
Dinv11203 Davidia involucrata HOM05D004105 ORTHO05D005649 4.1e-13 77.4 86 52.3
TWI39G0681 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 5.4e-13 77.0 86 51.2
Rhsim12G0177900 Rhododendron simsii HOM05D004105 ORTHO05D005649 7.1e-13 76.6 86 52.3
Actinidia08890 Actinidia chinensis HOM05D004105 ORTHO05D005649 9.2e-13 76.3 86 51.2
Prupe.5G146800 Prunus persica HOM05D004105 ORTHO05D005649 1.2e-12 75.9 86 51.2
EL10Ac5g11355 Beta vulgaris HOM05D004105 ORTHO05D005649 1.6e-12 75.5 86 50.0
MD14G1151700 Malus domestica HOM05D004105 ORTHO05D005649 1.6e-12 75.5 86 50.0
Manes.06G122800 Manihot esculenta HOM05D004105 ORTHO05D005649 1.6e-12 75.5 86 51.2
Oeu036699.1 Olea europaea HOM05D004105 ORTHO05D005649 1.6e-12 75.5 86 48.8
CiPaw.11G003700 Carya illinoinensis HOM05D004105 ORTHO05D005649 2.1e-12 75.1 86 48.8
Potri.015G101100 Populus trichocarpa HOM05D004105 ORTHO05D005649 2.1e-12 75.1 86 48.8
FvH4_5g08950 Fragaria vesca HOM05D004105 ORTHO05D005649 2.7e-12 74.7 86 48.8
FAN04G0399 Fragaria x ananassa HOM05D004105 ORTHO05D005649 2.7e-12 74.7 86 48.8
FAN08G1339 Fragaria x ananassa HOM05D004105 ORTHO05D005649 2.7e-12 74.7 86 48.8
FAN18G1589 Fragaria x ananassa HOM05D004105 ORTHO05D005649 2.7e-12 74.7 86 48.8
Lj9C482T3 Lonicera japonica HOM05D004105 ORTHO05D005649 2.7e-12 74.7 86 48.8
TAR371G1205 Trochodendron aralioides HOM05D004105 ORTHO05D005649 2.7e-12 74.7 86 50.0
Actinidia18331 Actinidia chinensis HOM05D004105 ORTHO05D005649 3.5e-12 74.3 86 50.0
FAN13G0496 Fragaria x ananassa HOM05D004105 ORTHO05D005649 3.5e-12 74.3 86 47.7
QL11p026924 Quercus lobata HOM05D004105 ORTHO05D005649 3.5e-12 74.3 86 50.0
Thecc.03G135100 Theobroma cacao HOM05D004105 ORTHO05D005649 3.5e-12 74.3 86 47.7
Cc10_g12640 Coffea canephora HOM05D004105 ORTHO05D005649 4.6e-12 73.9 86 47.7
Gohir.A07G048500 Gossypium hirsutum HOM05D004105 ORTHO05D005649 4.6e-12 73.9 86 47.7
Gohir.D07G052800 Gossypium hirsutum HOM05D004105 ORTHO05D005649 4.6e-12 73.9 86 47.7
Gorai.001G055800 Gossypium raimondii HOM05D004105 ORTHO05D005649 4.6e-12 73.9 86 47.7
Peaxi162Scf00334g00121 Petunia axillaris HOM05D004105 ORTHO05D005649 6.0e-12 73.6 86 48.8
PSO017G4116 Papaver somniferum HOM05D004105 ORTHO05D005649 7.8e-12 73.2 86 50.0
PSO478G2355 Papaver somniferum HOM05D004105 ORTHO05D005649 7.8e-12 73.2 86 50.0
RcHm_v2.0_Chr7g0189421 Rosa chinensis HOM05D004105 ORTHO05D005649 7.8e-12 73.2 86 47.7
TPR.G38501 Trifolium pratense HOM05D004105 ORTHO05D005649 7.8e-12 73.2 86 50.0
TWI23G0168 Tripterygium wilfordii HOM05D004105 ORTHO05D005649 7.8e-12 73.2 86 48.8
Cfa018749 Carpinus fangiana HOM05D004105 ORTHO05D005649 1.0e-11 72.8 86 48.8
AUR62034822 Chenopodium quinoa HOM05D004105 ORTHO05D005649 1.0e-11 72.8 86 47.7
Hma1.2p1_0572F.1_g181070 Hydrangea macrophylla HOM05D004105 ORTHO05D005649 1.0e-11 72.8 86 50.0
Cpa.g.sc4.152 Carica papaya HOM05D004105 ORTHO05D005649 1.3e-11 72.4 86 48.8
CsaV3_7G007260 Cucumis sativus L. HOM05D004105 ORTHO05D005649 1.3e-11 72.4 86 47.7
DCAR_021646 Daucus carota HOM05D004105 ORTHO05D005649 1.3e-11 72.4 86 48.8
Eucgr.K00727 Eucalyptus grandis HOM05D004105 ORTHO05D005649 1.3e-11 72.4 86 47.7
Phvul.009G118500 Phaseolus vulgaris HOM05D004105 ORTHO05D005649 1.3e-11 72.4 86 46.5
Sabra15G0121600 Salix brachista HOM05D004105 ORTHO05D005649 1.3e-11 72.4 86 47.7
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 1.7e-11 72.0 86 48.8
ECA247G3132 Erigeron canadensis HOM05D004105 ORTHO05D005649 1.7e-11 72.0 86 47.7
HanXRQChr09g0273511 Helianthus annuus HOM05D004105 ORTHO05D005649 1.7e-11 72.0 86 47.7
Medtr3g118070 Medicago truncatula HOM05D004105 ORTHO05D005649 1.7e-11 72.0 86 48.8
AUR62029560 Chenopodium quinoa HOM05D004105 ORTHO05D005649 2.3e-11 71.6 86 46.5
ClCG09G016340 Citrullus lanatus HOM05D004105 ORTHO05D005649 2.3e-11 71.6 86 47.7
Manes.14G048100 Manihot esculenta HOM05D004105 ORTHO05D005649 2.3e-11 71.6 86 46.5
vmacro16732 Vaccinium macrocarpon HOM05D004105 ORTHO05D005649 2.3e-11 71.6 86 47.7
MSTRG.13687 Avicennia marina HOM05D004105 ORTHO05D005649 3.0e-11 71.2 86 47.7
Ciclev10031414m.g Citrus clementina HOM05D004105 ORTHO05D005649 3.0e-11 71.2 86 46.5
Duzib068G0759 Durio zibethinus HOM05D004105 ORTHO05D005649 3.0e-11 71.2 86 46.5
Ca_15293_v3 Cicer arietinum L. HOM05D004105 ORTHO05D005649 3.9e-11 70.9 86 47.7
Haze_07185 Corylus avellana HOM05D004105 ORTHO05D005649 3.9e-11 70.9 86 48.8
Nn4g22230 Nelumbo nucifera HOM05D004105 ORTHO05D005649 3.9e-11 70.9 86 47.7
Nitab4.5_0002672g0010 Nicotiana tabacum HOM05D004105 ORTHO05D029789 3.9e-11 70.9 86 47.7
Psat5g001920 Pisum sativum HOM05D004105 ORTHO05D005649 3.9e-11 70.9 86 47.7
Rhsim08G0193500 Rhododendron simsii HOM05D004105 ORTHO05D005649 3.9e-11 70.9 86 46.5
Migut.E00706 Erythranthe guttata HOM05D004105 ORTHO05D005649 5.1e-11 70.5 86 47.7
Peaxi162Scf00681g00117 Petunia axillaris HOM05D004105 ORTHO05D005649 5.1e-11 70.5 86 47.7
Sed0023678 Sechium edule HOM05D004105 ORTHO05D005649 5.1e-11 70.5 86 46.5
VMungo1309G1206 Vigna mungo HOM05D004105 ORTHO05D005649 5.1e-11 70.5 86 46.5
MELO3C018572.2 Cucumis melo HOM05D004105 ORTHO05D005649 6.6e-11 70.1 86 46.5
Duzib084G0440 Durio zibethinus HOM05D004105 ORTHO05D005649 6.6e-11 70.1 86 45.3
HanXRQChr02g0034141 Helianthus annuus HOM05D004105 ORTHO05D005649 6.6e-11 70.1 86 48.8
Atru.chr6.1872 Acer truncatum HOM05D004105 ORTHO05D005649 1.1e-10 69.3 86 46.5
Glyma.06G002900 Glycine max HOM05D004105 ORTHO05D005649 1.1e-10 69.3 86 45.3
Potri.012G103000 Populus trichocarpa HOM05D004105 ORTHO05D005649 1.1e-10 69.3 86 46.5
Sc04g0000430 Simmondsia chinensis HOM05D004105 ORTHO05D005649 1.1e-10 69.3 86 45.3
PGSC0003DMG400032546 Solanum tuberosum HOM05D004105 ORTHO05D005649 1.1e-10 69.3 86 46.5
arahy.Tifrunner.gnm1.ann1.26LP8U Arachis hypogaea HOM05D004105 ORTHO05D005649 1.5e-10 68.9 86 46.5
unitig_32.g11186 Utricularia gibba HOM05D004105 ORTHO05D005649 1.5e-10 68.9 86 44.2
Duzib205G0778 Durio zibethinus HOM05D004105 ORTHO05D005649 1.9e-10 68.6 86 45.3
ECA232G0449 Erigeron canadensis HOM05D004105 ORTHO05D005649 1.9e-10 68.6 86 44.2
Solyc04g009200.3 Solanum lycopersicum HOM05D004105 ORTHO05D005649 1.9e-10 68.6 86 45.3
Sopen04g004330 Solanum pennellii HOM05D004105 ORTHO05D005649 1.9e-10 68.6 86 45.3
ATR0582G244 Amborella trichopoda HOM05D004105 ORTHO05D005649 2.5e-10 68.2 86 44.2
Glyma.04G002900 Glycine max HOM05D004105 ORTHO05D005649 2.5e-10 68.2 86 45.3
PGR083G1562 Punica granatum HOM05D004105 ORTHO05D005649 2.5e-10 68.2 86 45.3
Lalb_Chr08g0246741 Lupinus albus HOM05D004105 ORTHO05D005649 3.3e-10 67.8 86 45.3
Aqoxy3G01668 Aquilegia oxysepala HOM05D004105 ORTHO05D005649 4.3e-10 67.4 86 46.5
arahy.Tifrunner.gnm1.ann1.NV4Y6S Arachis hypogaea HOM05D004105 ORTHO05D005649 4.3e-10 67.4 86 45.3
Haze_07186 Corylus avellana HOM05D004105 ORTHO05D005649 4.3e-10 67.4 86 46.5
Lsat_1_v5_gn_1_32701 Lactuca sativa HOM05D004105 ORTHO05D005649 4.3e-10 67.4 86 46.5
Hund02468 Selenicereus undatus HOM05D004105 ORTHO05D005649 4.3e-10 67.4 86 45.3
TAR622G0102 Trochodendron aralioides HOM05D004105 ORTHO05D005649 5.6e-10 67.0 86 46.5
AL5G28210 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 9.5e-10 66.2 86 44.2
AT3G48730 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 9.5e-10 66.2 86 44.2
Carub.0005s1489 Capsella rubella HOM05D004105 ORTHO05D005649 9.5e-10 66.2 86 44.2
AUR62005532 Chenopodium quinoa HOM05D004105 ORTHO05D005649 9.5e-10 66.2 73 49.3
MBI04_g30438_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 9.5e-10 66.2 86 44.2
CDE05G1664 Ceratophyllum demersum HOM05D004105 ORTHO05D005649 1.2e-09 65.9 86 43.0
SGA_v2.0_scaffold99G29471 Striga asiatica HOM05D004105 ORTHO05D005649 1.6e-09 65.5 86 43.0
Gohir.A03G053920 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.1e-09 65.1 86 43.0
Gohir.D03G112900 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.1e-09 65.1 86 43.0
Gohir.D03G112950 Gossypium hirsutum HOM05D004105 ORTHO05D005649 2.1e-09 65.1 86 43.0
Gorai.003G119100 Gossypium raimondii HOM05D004105 ORTHO05D005649 2.1e-09 65.1 86 43.0
MBI11_g13058_MAGBIO Magnolia biondii HOM05D004105 ORTHO05D005649 2.1e-09 65.1 86 45.3
A09p08350 Brassica napus HOM05D004105 ORTHO05D005649 2.8e-09 64.7 86 44.2
BraA09t36484Z Brassica rapa HOM05D004105 ORTHO05D005649 2.8e-09 64.7 86 44.2
Thhalv10010337m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 2.8e-09 64.7 86 43.0
Sp5g13290 Schrenkiella parvula HOM05D004105 ORTHO05D005649 2.8e-09 64.7 86 43.0
CAN.G619.6 Capsicum annuum HOM05D004105 ORTHO05D005649 3.6e-09 64.3 86 44.2
Gohir.A03G054100 Gossypium hirsutum HOM05D004105 ORTHO05D005649 3.6e-09 64.3 86 43.0
Zm00001eb291360 Zea mays HOM05D004105 ORTHO05D005649 3.6e-09 64.3 86 43.0
AagrBONN_evm.TU.Sc2ySwM_368.3191 Anthoceros agrestis HOM05D004105 ORTHO05D005649 4.7e-09 63.9 86 45.3
BcaB04g19926 Brassica carinata HOM05D004105 ORTHO05D005649 4.7e-09 63.9 86 43.0
Lj1g0022155 Lotus japonicus HOM05D004105 ORTHO05D005649 4.7e-09 63.9 86 43.0
CARHR277440 Cardamine hirsuta HOM05D004105 ORTHO05D005649 6.2e-09 63.5 86 43.0
Aa31LG1G18370 Aethionema arabicum HOM05D004105 ORTHO05D005649 8.1e-09 63.2 86 44.2
BcaC04g23339 Brassica carinata HOM05D004105 ORTHO05D005649 8.1e-09 63.2 86 41.9
A06p30190 Brassica napus HOM05D004105 ORTHO05D005649 8.1e-09 63.2 86 43.0
C09p09420 Brassica napus HOM05D004105 ORTHO05D005649 8.1e-09 63.2 86 41.9
BolC9t53854H Brassica oleracea HOM05D004105 ORTHO05D005649 8.1e-09 63.2 86 41.9
BraA06t25970Z Brassica rapa HOM05D004105 ORTHO05D005649 8.1e-09 63.2 86 43.0
SHI10683 Sapria himalayana HOM05D004105 ORTHO05D005649 1.1e-08 62.8 85 45.9
SMO337G0012 Selaginella moellendorffii HOM05D004105 ORTHO05D005649 1.1e-08 62.8 85 41.2
Pp3c16_12390 Physcomitrium patens HOM05D004105 ORTHO05D005649 1.4e-08 62.4 85 44.7
AL8G40650 Arabidopsis lyrata HOM05D004105 ORTHO05D005649 1.8e-08 62.0 86 43.0
Thhalv10004138m.g Eutrema salsugineum HOM05D004105 ORTHO05D005649 1.8e-08 62.0 86 41.9
BcaB02g09750 Brassica carinata HOM05D004105 ORTHO05D005649 2.3e-08 61.6 86 41.9
BcaC01g02611 Brassica carinata HOM05D004105 ORTHO05D005649 2.3e-08 61.6 86 41.9
C03p62870 Brassica napus HOM05D004105 ORTHO05D005649 2.3e-08 61.6 86 41.9
BolC3t18541H Brassica oleracea HOM05D004105 ORTHO05D005649 2.3e-08 61.6 86 41.9
Sp2g26660 Schrenkiella parvula HOM05D004105 ORTHO05D005649 2.3e-08 61.6 86 41.9
THA.LOC104818177 Tarenaya hassleriana HOM05D004105 ORTHO05D005649 2.3e-08 61.6 86 41.9
Os08g0532200 Oryza sativa ssp. japonica HOM05D004105 ORTHO05D005649 4.0e-08 60.8 86 39.5
AT5G63570 Arabidopsis thaliana HOM05D004105 ORTHO05D005649 5.2e-08 60.5 86 40.7
Pp3c27_4150 Physcomitrium patens HOM05D004105 ORTHO05D005649 8.9e-08 59.7 86 40.7
arahy.Tifrunner.gnm1.ann1.M8Q52W Arachis hypogaea HOM05D004105 ORTHO05D005649 1.5e-07 58.9 86 40.7
HPP92_000338 Vanilla planifolia HOM05D004105 ORTHO05D005649 3.4e-07 57.8 86 38.4
Carub.0008s2430 Capsella rubella HOM05D004105 ORTHO05D005649 5.8e-07 57.0 86 39.5
SEGI_17449 Sequoiadendron giganteum HOM05D004105 ORTHO05D005649 7.6e-07 56.6 85 37.6
CBR_g49915 Chara braunii HOM05D004105 ORTHO05D005649 9.9e-07 56.2 85 38.8
RcHm_v2.0_Chr7g0199591 Rosa chinensis HOM05D004105 ORTHO05D005649 3.7e-06 54.3 73 41.1
CDE02G1094 Ceratophyllum demersum HOM05D004105 ORTHO05D030951 4.9e-06 53.9 85 37.6


User provided reference genes

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