Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 0.0e+00 1107.0 552 100.0
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.8e-241 837.8 588 76.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.5e-234 816.2 588 73.5
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 4.4e-210 734.9 593 68.8
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.6e-164 582.4 587 54.9
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.4e-163 579.7 587 54.5
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.6e-162 576.2 587 55.0
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 7.9e-151 538.1 589 50.6
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 3.4e-138 496.1 591 47.2
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.8e-132 476.5 584 46.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 5.9e-130 468.8 581 45.8
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 5.0e-129 465.7 587 45.3
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 4.6e-127 459.1 587 44.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 5.1e-126 455.7 590 44.7
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 6.7e-126 455.3 588 45.9
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 7.4e-125 451.8 599 44.2
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.8e-124 449.9 586 44.9
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 3.8e-121 439.5 586 45.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.5e-120 436.8 598 43.1
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.6e-119 434.1 578 45.3
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.4e-118 431.0 586 44.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.6e-117 426.8 589 41.9
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 2.8e-116 423.3 584 42.5
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.1e-115 421.4 589 43.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.1e-115 419.9 586 41.1
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 3.1e-115 419.9 588 41.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 9.1e-115 418.3 588 43.9
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 3.5e-114 416.4 590 42.5
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 5.9e-114 415.6 587 41.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.7e-113 414.1 597 41.0
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.9e-113 413.3 575 41.6
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 6.5e-113 412.1 603 41.8
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.5e-112 411.0 588 41.5
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 3.2e-112 409.8 597 41.5
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 9.4e-112 408.3 576 41.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.6e-111 406.4 586 41.6
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 8.0e-111 405.2 591 42.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.0e-110 402.9 598 41.1
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 5.2e-110 402.5 574 41.1
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.6e-109 400.2 588 41.3
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 4.4e-109 399.4 593 40.0
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 9.7e-109 398.3 589 40.7
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 2.8e-108 396.7 593 40.5
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 8.2e-108 395.2 581 42.5
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.2e-106 391.3 593 39.6
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.6e-106 391.0 586 40.4
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.6e-106 391.0 595 40.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 3.5e-106 389.8 586 42.0
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 3.5e-106 389.8 580 41.0
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 7.7e-106 388.7 601 40.8
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.9e-104 384.0 580 39.5
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 9.4e-104 381.7 577 40.2
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 9.4e-104 381.7 588 41.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.7e-103 380.2 577 40.2
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 3.6e-103 379.8 586 39.9
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 6.1e-103 379.0 480 46.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.3e-102 377.1 596 38.9
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.0e-102 376.7 589 41.3
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 8.8e-102 375.2 586 40.8
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.6e-101 373.6 586 40.4
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.7e-101 372.5 596 37.9
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.8e-99 367.5 552 38.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.4e-99 367.1 599 37.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 5.4e-99 365.9 583 39.5
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.1e-99 365.2 583 39.3
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-98 364.8 583 39.5
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.3e-97 361.3 557 39.9
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.7e-97 360.9 597 38.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 6.5e-97 359.0 588 40.8
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.5e-97 358.6 587 38.5
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.9e-96 357.5 587 38.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 8.0e-95 352.1 586 39.4
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 8.8e-94 348.6 585 39.1
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 1.5e-93 347.8 585 38.6
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.7e-93 345.9 574 39.4
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.3e-92 344.7 602 37.2
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.7e-92 344.4 532 40.2
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 2.2e-92 344.0 581 39.6
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.1e-91 339.7 586 36.2
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.0e-90 337.4 457 44.9
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 2.7e-90 337.0 604 37.4
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.3e-89 334.7 575 37.7
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 2.9e-89 333.6 480 42.9
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 3.8e-89 333.2 519 38.3
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.4e-85 320.1 577 37.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.2e-84 317.4 496 39.3
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 4.9e-84 316.2 598 34.6
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 8.3e-84 315.5 591 36.7
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 2.7e-82 310.5 585 35.7
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 8.6e-81 305.4 585 35.4
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.5e-80 304.7 596 35.7
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.1e-79 300.8 587 34.6
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 6.2e-79 299.3 579 34.0
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 5.2e-78 296.2 584 34.8
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 8.9e-78 295.4 521 36.1
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 9.2e-75 285.4 373 44.0
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 3.9e-73 280.0 583 33.4
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 3.2e-67 260.4 279 48.4
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 5.4e-67 259.6 582 31.6
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-66 258.5 582 31.3
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.2e-66 258.5 582 31.3
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.2e-66 258.5 582 31.3
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 1.0e-65 255.4 302 44.7
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-65 255.0 584 31.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.3e-65 254.2 582 30.1
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.3e-64 249.2 385 42.1
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.1e-63 247.7 377 41.6
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 7.1e-59 232.6 582 31.1
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-55 221.5 264 45.8
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 3.6e-55 220.3 630 29.7
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.6e-55 220.3 228 46.9
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 8.4e-52 209.1 536 31.7
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 6.2e-47 193.0 374 36.9
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 3.0e-41 174.1 471 32.5
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 8.7e-41 172.6 314 33.8
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 2.2e-36 157.9 227 35.2
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 2.1e-34 151.4 431 27.4
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 3.9e-33 147.1 541 26.6
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 6.9e-30 136.3 313 26.5
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 6.5e-28 129.8 299 30.4
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 8.4e-28 129.4 165 42.4
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.6e-26 125.2 196 34.2
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.8e-17 95.1 120 42.5
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 3.9e-17 94.0 349 23.2
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 1.9e-16 91.7 226 30.1
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.3e-16 90.9 192 34.4
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 8.2e-15 86.3 113 38.1
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.2e-11 73.9 69 55.1
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-09 68.9 92 38.0
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-09 67.8 171 31.6
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 8.8e-09 66.2 81 35.8
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-08 65.9 172 30.8
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.4e-06 58.9 141 33.3
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 2.4e-06 58.2 181 26.0
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.1e-06 57.4 112 33.9


User provided reference genes

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