Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.0e-98 362.5 189 100.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.6e-79 299.7 190 83.2
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.3e-78 295.8 189 81.0
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.2e-76 289.3 192 80.2
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 3.7e-76 288.5 189 80.4
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.0e-73 280.4 192 78.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.0e-73 280.4 192 78.6
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.3e-73 279.3 189 77.2
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.1e-72 276.9 189 75.7
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.1e-72 276.9 189 76.2
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 2.8e-71 272.3 189 76.7
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 4.7e-71 271.6 172 80.8
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 4.7e-71 271.6 188 77.1
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 8.0e-71 270.8 189 73.5
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.0e-70 270.4 189 74.6
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.1e-70 268.9 189 73.5
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.1e-70 268.9 189 73.0
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.0e-70 268.5 194 75.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 4.0e-70 268.5 189 73.5
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 5.2e-70 268.1 190 74.2
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 6.8e-70 267.7 189 74.6
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.8e-70 267.7 188 76.6
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.9e-70 267.3 188 76.6
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.2e-69 266.9 190 75.3
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.0e-69 266.2 189 74.1
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.0e-69 266.2 190 73.2
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.6e-69 265.8 188 76.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 3.4e-69 265.4 189 72.5
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 4.4e-69 265.0 188 75.5
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 9.8e-69 263.8 191 73.3
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.2e-68 262.7 193 71.0
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.2e-68 262.7 184 73.4
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.2e-68 262.7 189 73.0
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.9e-68 262.3 189 72.5
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-68 262.3 189 72.5
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-68 262.3 189 72.5
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.7e-68 261.9 190 73.2
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.7e-68 261.9 190 73.2
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 4.9e-68 261.5 190 73.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 8.3e-68 260.8 195 73.8
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.1e-67 260.4 193 71.5
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.9e-67 259.6 190 73.2
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.9e-67 259.6 188 71.3
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 3.2e-67 258.8 188 71.3
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 3.2e-67 258.8 190 72.6
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 3.2e-67 258.8 190 73.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.1e-67 258.5 189 72.5
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.4e-67 258.1 190 72.6
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 9.2e-67 257.3 170 80.0
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.2e-66 256.9 190 72.6
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 2.7e-66 255.8 189 72.0
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.6e-66 255.0 190 72.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.6e-66 255.0 190 72.1
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.6e-66 255.0 188 69.7
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.0e-65 253.8 192 72.4
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 3.9e-65 251.9 189 72.0
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 5.0e-65 251.5 190 72.1
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 5.0e-65 251.5 189 71.4
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 5.0e-65 251.5 190 71.6
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 8.6e-65 250.8 189 68.8
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.5e-64 250.0 187 72.2
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.3e-64 248.8 205 64.9
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 4.3e-64 248.4 188 68.6
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.6e-64 248.1 189 69.8
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.6e-63 246.5 189 68.8
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.1e-63 246.1 193 70.5
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 2.1e-63 246.1 189 70.4
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 6.2e-63 244.6 190 70.5
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 6.2e-63 244.6 189 68.8
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.1e-62 243.8 160 78.1
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.4e-62 243.4 189 68.8
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.4e-62 243.4 188 69.1
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.8e-62 243.0 189 68.8
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.8e-62 243.0 179 70.4
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.3e-62 242.7 217 63.1
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 3.1e-62 242.3 192 70.3
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.0e-62 241.9 189 67.2
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 6.8e-62 241.1 193 70.5
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.2e-61 240.4 188 70.7
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.2e-61 240.4 190 69.5
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 3.4e-61 238.8 227 60.8
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 5.8e-61 238.0 192 68.8
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.7e-60 236.5 188 69.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 3.7e-60 235.3 189 67.7
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.9e-60 235.0 190 66.8
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.9e-59 233.0 192 67.2
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.9e-59 233.0 189 66.7
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.6e-58 229.9 192 66.7
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 2.1e-58 229.6 192 66.7
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-58 229.6 193 68.4
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.1e-58 229.6 181 69.1
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 4.6e-58 228.4 194 68.0
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 4.6e-58 228.4 194 68.0
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 4.6e-58 228.4 190 65.8
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 4.6e-58 228.4 192 66.7
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 6.0e-58 228.0 193 67.9
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 6.0e-58 228.0 193 67.9
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 6.0e-58 228.0 193 67.9
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 6.0e-58 228.0 190 65.8
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 3.0e-57 225.7 195 63.6
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 6.6e-57 224.6 171 71.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.1e-56 223.8 206 59.2
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.5e-56 223.4 180 68.9
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.5e-56 223.4 156 73.1
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 3.3e-56 222.2 190 67.4
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.6e-56 221.5 177 70.1
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 7.3e-56 221.1 202 61.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-55 220.3 162 73.5
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.2e-55 220.3 190 64.2
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-55 219.9 158 72.8
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-55 219.9 158 73.4
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.6e-55 219.9 158 72.8
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.1e-55 219.5 147 78.2
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 8.1e-55 217.6 194 63.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.1e-54 215.7 189 61.4
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 6.8e-54 214.5 189 63.0
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 6.8e-54 214.5 189 64.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.8e-53 211.5 218 57.8
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.3e-52 210.3 135 81.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.2e-52 209.5 125 82.4
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.2e-52 209.5 124 84.7
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.9e-52 208.4 158 69.0
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 8.3e-52 207.6 126 81.7
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.4e-51 206.8 129 80.6
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 7.1e-51 204.5 189 62.4
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-50 203.0 191 59.7
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.5e-50 202.2 186 58.6
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.5e-50 202.2 186 59.1
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 7.8e-50 201.1 155 70.3
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.7e-49 199.9 165 67.3
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.7e-49 199.9 157 69.4
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 2.3e-49 199.5 124 79.0
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 6.6e-49 198.0 157 68.8
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 4.3e-48 195.3 124 79.0
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 7.3e-48 194.5 175 60.0
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.2e-47 193.7 193 59.1
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-47 192.6 201 58.2
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.1e-46 190.7 147 70.7
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 4.4e-45 185.3 125 75.2
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 7.6e-45 184.5 125 75.2
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 9.9e-45 184.1 125 75.2
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.6e-42 176.8 140 64.3
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 8.7e-41 171.0 202 52.5
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.6e-39 166.8 194 51.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.0e-38 162.2 190 51.6
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.0e-37 159.8 191 50.8
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 2.0e-37 159.8 124 62.9
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.6e-37 159.5 196 53.6
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 3.4e-37 159.1 152 56.6
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 2.2e-36 156.4 127 62.2
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.2e-34 150.6 139 59.0
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 3.5e-34 149.1 190 50.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.3e-33 147.1 100 71.0
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-32 143.7 177 49.7
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 5.6e-32 141.7 167 50.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 2.8e-31 139.4 120 64.2
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.8e-30 136.7 101 65.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.0e-30 135.6 110 63.6
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 6.9e-30 134.8 94 75.5
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 2.6e-29 132.9 87 78.2
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 8.4e-28 127.9 155 51.6
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.5e-24 117.1 69 84.1
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 6.9e-22 108.2 68 79.4
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.6e-21 106.3 68 77.9
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.9e-17 92.4 54 79.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.7e-17 91.7 57 75.4
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.7e-17 91.7 59 72.9
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 8.7e-17 91.3 128 49.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.5e-16 90.5 128 49.2
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.5e-16 90.5 59 71.2
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 5.6e-16 88.6 124 40.3
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 9.6e-16 87.8 91 50.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.7e-15 85.9 47 85.1
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 3.5e-10 69.3 81 49.4
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 4.6e-10 68.9 100 49.0
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 4.8e-07 58.9 37 73.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.3e-07 58.5 57 50.9
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.1e-06 57.8 57 50.9
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 2.4e-06 56.6 31 87.1


User provided reference genes

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