Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.0e-90 334.0 197 100.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-65 253.8 187 81.3
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-65 253.8 187 81.3
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.2e-64 250.4 187 82.4
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 6.0e-61 238.0 187 74.9
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 2.3e-60 236.1 187 74.9
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.6e-60 234.6 191 76.4
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 6.6e-60 234.6 187 73.3
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.1e-59 233.8 189 76.2
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.1e-59 233.8 202 71.3
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 4.8e-58 228.4 187 74.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.8e-57 226.5 187 74.3
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 3.1e-57 225.7 187 73.3
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.2e-56 223.8 187 73.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 1.7e-55 219.9 187 71.7
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.7e-55 219.9 187 69.0
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.2e-55 219.5 187 70.6
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.9e-55 218.4 198 63.1
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 6.4e-55 218.0 188 70.7
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 6.4e-55 218.0 187 67.9
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 8.4e-55 217.6 187 69.5
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.1e-54 217.2 187 72.7
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.1e-54 217.2 187 69.5
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.4e-54 216.9 187 70.6
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.4e-54 216.9 187 71.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.9e-54 216.5 188 70.7
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.9e-54 216.5 188 70.7
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.9e-54 216.5 187 71.7
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 3.2e-54 215.7 188 69.7
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 4.2e-54 215.3 187 70.1
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.2e-54 215.3 187 70.6
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 5.4e-54 214.9 187 71.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 7.1e-54 214.5 188 69.1
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 7.1e-54 214.5 188 69.1
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 9.3e-54 214.2 187 73.3
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 9.3e-54 214.2 188 72.3
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-53 213.8 188 69.7
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.2e-53 213.8 188 69.7
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.2e-53 213.8 188 69.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.6e-53 213.4 187 69.0
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 1.6e-53 213.4 188 71.8
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-53 213.4 187 67.9
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.1e-53 213.0 188 68.6
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 2.7e-53 212.6 188 72.9
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.7e-53 212.6 187 72.2
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 4.6e-53 211.8 187 71.7
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 6.0e-53 211.5 187 68.4
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 6.0e-53 211.5 188 68.6
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.0e-52 210.7 200 70.0
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-52 210.3 189 69.8
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.3e-52 210.3 189 69.8
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.3e-52 210.3 187 71.1
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.0e-52 209.1 187 70.1
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 5.1e-52 208.4 188 71.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 5.1e-52 208.4 187 65.2
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 5.1e-52 208.4 187 69.0
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 8.7e-52 207.6 187 70.6
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 8.7e-52 207.6 187 63.1
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 8.7e-52 207.6 189 69.8
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.5e-51 206.8 188 68.6
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 1.5e-51 206.8 187 70.1
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.5e-51 206.8 191 68.6
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 1.9e-51 206.5 187 70.1
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 3.3e-51 205.7 186 67.2
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.3e-51 205.7 187 71.7
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 4.3e-51 205.3 192 70.3
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 7.4e-51 204.5 187 68.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 9.6e-51 204.1 185 71.9
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 9.6e-51 204.1 187 69.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.3e-50 203.8 183 69.4
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 2.8e-50 202.6 189 69.3
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.7e-50 202.2 188 69.1
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 3.7e-50 202.2 187 73.8
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 4.8e-50 201.8 188 70.2
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 4.8e-50 201.8 190 68.4
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 6.2e-50 201.4 188 70.7
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.1e-49 200.7 192 71.4
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.4e-49 200.3 190 70.5
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.4e-49 199.5 187 69.0
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 4.0e-49 198.7 189 65.1
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 6.9e-49 198.0 187 69.0
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 6.9e-49 198.0 188 68.6
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.0e-49 197.6 189 65.1
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 1.2e-48 197.2 190 64.7
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.5e-48 196.8 189 60.8
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.6e-48 196.1 190 66.8
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 3.4e-48 195.7 189 67.2
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.4e-48 195.7 189 67.2
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 4.5e-48 195.3 189 63.5
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 7.6e-48 194.5 189 65.1
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.0e-47 194.1 187 69.0
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.0e-47 194.1 189 68.3
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.7e-47 193.4 186 61.8
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.2e-47 193.0 188 68.1
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.2e-47 193.0 190 66.3
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.9e-47 192.6 189 64.6
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 4.9e-47 191.8 187 67.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 8.4e-47 191.0 188 66.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.4e-46 190.3 188 68.1
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.5e-46 189.5 191 66.0
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.2e-46 189.1 190 59.5
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 3.2e-46 189.1 189 70.4
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.2e-46 188.7 187 70.1
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.2e-45 187.2 189 68.8
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 3.5e-45 185.7 187 66.3
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.6e-45 185.3 190 58.9
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 6.0e-45 184.9 187 64.2
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 7.9e-45 184.5 187 64.2
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 7.9e-45 184.5 187 57.8
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 3.0e-44 182.6 188 65.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 6.7e-44 181.4 187 56.7
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 8.7e-44 181.0 190 68.4
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 8.7e-44 181.0 190 68.4
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.1e-43 180.6 187 63.6
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 3.3e-43 179.1 188 64.4
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.3e-42 177.2 187 64.7
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.1e-42 176.4 190 64.7
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.8e-42 176.0 187 63.1
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.1e-41 174.1 191 60.2
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 1.4e-41 173.7 187 63.1
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 2.4e-41 172.9 187 64.2
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.5e-40 170.2 188 62.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-40 168.7 187 57.2
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 8.4e-39 164.5 187 59.4
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.9e-38 163.3 183 62.3
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 5.5e-38 161.8 187 60.4
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.5e-38 161.8 187 64.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-37 160.2 187 64.2
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.1e-37 159.8 227 54.6
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-36 157.5 187 63.6
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.1e-36 155.2 187 63.1
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 1.5e-35 153.7 188 55.9
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.5e-35 152.9 174 62.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 4.3e-35 152.1 187 62.6
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 5.7e-35 151.8 144 71.5
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.2e-34 149.8 188 58.5
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.7e-34 149.1 187 61.5
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 4.8e-34 148.7 187 61.5
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 2.4e-33 146.4 189 59.8
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.1e-30 137.5 148 62.8
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.4e-30 134.4 156 61.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-29 134.0 190 54.2
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.4e-28 130.6 89 80.9
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-27 127.1 75 88.0
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 2.0e-27 126.7 193 54.4
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.3e-27 125.6 89 76.4
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 5.3e-25 118.6 75 77.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-24 117.5 90 72.2
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.2e-24 117.5 81 77.8
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.0e-23 114.4 118 61.9
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 2.2e-23 113.2 75 78.7
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.0e-23 112.1 185 42.7
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.9e-22 110.2 139 56.1
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.2e-21 107.5 75 69.3
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 5.1e-20 102.1 191 46.6
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 6.7e-20 101.7 195 46.2
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.8e-20 101.3 72 75.0
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 2.6e-19 99.8 116 62.1
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-17 94.4 84 65.5
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-17 94.0 178 44.4
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 1.8e-17 93.6 181 46.4
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-17 93.2 69 66.7
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-17 93.2 69 66.7
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 3.1e-17 92.8 82 64.6
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.1e-17 91.3 69 66.7
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.5e-16 89.0 75 61.3
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 1.0e-15 87.8 76 65.8
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 3.2e-14 82.8 91 56.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.5e-14 82.0 91 60.4
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.0e-13 78.2 90 54.4
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.5e-06 57.4 89 44.9
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 9.4e-06 54.7 65 46.2


User provided reference genes

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