Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 0.0e+00 1320.8 723 100.0
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.0e-299 1031.6 698 79.4
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.4e-296 1022.7 698 78.9
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-283 979.5 699 74.2
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.3e-281 973.0 698 79.9
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 1.2e-279 966.5 697 79.3
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 6.9e-256 887.5 711 68.2
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 7.7e-255 884.0 700 73.9
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 2.5e-253 879.0 700 67.6
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.2e-247 860.1 706 68.3
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.4e-240 835.9 700 66.4
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 3.8e-238 828.6 698 65.0
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.5e-237 824.7 708 65.0
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 3.0e-235 818.9 701 64.6
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 6.7e-235 817.8 715 63.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 8.8e-235 817.4 701 64.6
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 5.9e-231 804.7 699 63.2
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 5.9e-231 804.7 707 63.2
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 1.3e-230 803.5 700 63.0
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 2.0e-226 789.6 698 62.9
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 4.4e-226 788.5 700 61.6
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 8.3e-225 784.3 717 61.1
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.2e-223 780.4 721 61.3
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.2e-221 771.9 718 61.7
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 7.2e-221 771.2 702 62.5
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.6e-220 770.0 700 61.9
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.0e-219 767.3 703 59.9
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.0e-219 765.8 701 62.2
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 5.2e-219 765.0 706 63.3
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 6.8e-219 764.6 703 61.2
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 8.8e-219 764.2 699 61.1
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-218 763.8 701 62.1
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.2e-218 763.8 699 61.2
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 3.4e-218 762.3 697 60.1
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 5.7e-218 761.5 698 60.5
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 7.5e-218 761.1 703 60.7
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 7.5e-218 761.1 699 60.7
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 9.8e-218 760.8 704 60.5
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.7e-217 758.8 700 65.4
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 3.7e-217 758.8 700 61.3
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-216 757.3 700 60.6
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.4e-216 756.9 698 59.6
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 9.2e-216 754.2 699 60.4
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.2e-215 753.8 706 59.2
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.0e-214 750.7 717 59.1
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 6.6e-214 748.0 692 61.0
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.9e-213 746.5 706 58.6
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.6e-212 743.4 708 59.0
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.4e-211 740.3 707 59.1
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 8.9e-211 737.6 730 57.8
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.2e-210 737.3 701 59.1
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 5.7e-210 734.9 697 58.8
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 2.9e-209 732.6 702 58.8
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.4e-208 729.6 701 57.5
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 7.0e-208 728.0 700 57.4
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 7.8e-207 724.5 704 58.0
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 5.6e-205 718.4 698 57.9
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 5.6e-205 718.4 713 58.2
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 9.5e-205 717.6 704 58.0
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-204 717.2 699 58.2
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 4.7e-204 715.3 715 58.3
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.4e-203 713.8 706 58.6
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 4.9e-201 705.3 716 56.6
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.4e-201 704.9 699 57.4
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 1.1e-200 704.1 716 58.2
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.9e-200 703.4 701 56.8
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 4.1e-200 702.2 700 57.7
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 4.1e-200 702.2 711 57.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 6.0e-199 698.4 699 55.4
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.6e-198 694.9 699 56.9
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.9e-197 693.3 702 58.3
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.9e-197 693.3 699 57.1
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.5e-197 693.0 855 48.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 2.8e-196 689.5 719 54.9
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 2.8e-196 689.5 699 56.9
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 4.7e-196 688.7 701 58.3
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 8.1e-196 688.0 699 54.8
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 1.1e-195 687.6 701 57.2
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 5.2e-195 685.3 705 56.0
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 6.8e-195 684.9 701 56.2
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 2.0e-194 683.3 715 55.8
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.6e-194 682.9 702 57.7
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 7.5e-194 681.4 699 56.2
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 2.1e-191 673.3 708 57.1
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 4.6e-191 672.2 699 56.4
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 2.3e-190 669.8 702 55.1
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 5.1e-190 668.7 711 55.0
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 1.5e-189 667.2 702 58.3
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 9.5e-189 664.5 712 55.9
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 1.8e-187 660.2 705 56.5
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 5.8e-186 655.2 705 55.3
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 2.2e-185 653.3 702 55.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.9e-184 650.2 702 54.7
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 1.9e-184 650.2 706 54.8
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.4e-184 649.8 699 54.9
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 3.2e-184 649.4 712 54.1
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 4.1e-184 649.0 700 54.9
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.0e-182 644.4 702 53.7
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 2.3e-182 643.3 718 54.2
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 2.8e-180 636.3 706 54.0
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.2e-178 630.9 708 53.1
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 3.4e-178 629.4 708 54.1
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 3.4e-178 629.4 707 53.6
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.2e-176 622.5 717 55.6
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 1.2e-175 620.9 709 53.6
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.3e-174 617.5 709 52.8
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.7e-174 617.1 708 52.7
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.7e-174 617.1 708 52.7
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 8.7e-174 614.8 708 53.2
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.5e-173 614.0 709 52.6
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 2.5e-173 613.2 709 52.8
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 2.8e-172 609.8 708 52.7
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 6.2e-172 608.6 714 52.2
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.4e-171 607.4 702 53.8
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.4e-170 602.8 707 50.6
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 9.9e-170 601.3 707 50.2
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.3e-166 590.1 722 50.3
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 9.3e-160 568.2 632 53.8
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.7e-159 566.6 719 49.0
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.1e-156 557.0 378 77.0
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 5.8e-154 548.9 710 49.4
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 5.5e-152 542.3 712 49.7
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 1.8e-150 537.3 703 49.1
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-146 523.9 375 71.5
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-146 523.9 375 71.5
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 2.1e-143 513.8 321 83.8
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 3.9e-142 509.6 727 47.2
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.2e-140 503.8 373 73.5
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 4.1e-139 499.6 552 54.9
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 7.2e-136 488.8 700 47.3
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.0e-126 458.4 610 46.6
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.1e-125 454.9 319 75.5
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 5.9e-122 442.6 629 45.6
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.2e-101 375.2 327 73.4
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.3e-100 371.7 481 50.7
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.9e-96 357.8 569 41.3
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.4e-94 351.7 743 37.7
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 2.3e-94 350.9 564 41.5
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 4.4e-85 320.1 381 49.9
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 7.5e-85 319.3 590 38.0
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 8.3e-84 315.8 379 48.8
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.5e-82 310.5 337 54.3
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.3e-81 308.5 250 65.6
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.3e-78 297.7 412 49.5
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 9.9e-69 265.8 381 43.8
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 4.4e-61 240.4 442 37.8
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-57 228.8 151 80.8
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.6e-57 226.5 353 45.6
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 2.2e-52 211.5 534 32.2
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 9.0e-46 189.5 328 43.3
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 4.2e-43 180.6 164 62.8
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.7e-42 177.9 152 57.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 3.3e-40 171.0 236 43.6
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 6.5e-28 130.2 419 26.7
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 1.4e-27 129.0 69 92.8
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-26 125.9 69 88.4
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.6e-26 124.4 198 44.9
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 1.0e-25 122.9 258 36.0
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 2.0e-24 118.6 373 27.9
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.1e-22 110.9 62 87.1
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 5.3e-22 110.5 419 26.5
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-21 108.6 57 96.5
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.6e-18 99.0 101 48.5
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.0e-17 96.3 59 81.4
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 8.8e-17 93.2 59 79.7
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 9.7e-16 89.7 56 80.4
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.8e-15 88.2 87 52.9
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.1e-14 86.3 87 52.9
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.9e-09 67.8 51 64.7
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.1e-08 66.2 189 31.7
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 2.0e-08 65.5 101 47.5
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 8.2e-07 60.1 380 22.1


User provided reference genes

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