Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 2703.3 1388 100.0
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 2694.5 1386 99.8
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2227.2 1392 82.5
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2076.2 1392 78.2
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2049.6 1394 77.3
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2018.4 1450 74.8
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 1911.0 1391 70.9
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 1877.8 1391 70.6
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1855.1 1392 68.8
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 1801.9 1392 67.6
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 1792.3 1391 68.4
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 1791.2 1391 68.6
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1775.4 1389 66.9
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1772.3 1389 66.9
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 1768.1 1391 67.4
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 1767.7 1396 66.8
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 1767.3 1392 67.5
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 1756.1 1396 67.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 1755.0 1393 67.8
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 1752.6 1392 65.9
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1744.2 1423 65.6
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 1743.8 1392 66.2
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 1741.1 1391 65.2
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 1731.5 1392 65.5
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1730.7 1392 65.4
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1724.9 1453 64.0
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1724.1 1458 63.8
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1721.4 1392 65.4
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1718.7 1468 63.3
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1714.9 1392 64.2
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1713.0 1395 64.4
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1710.7 1392 64.9
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1702.2 1386 64.6
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1698.3 1391 64.1
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 1696.4 1388 64.5
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1691.0 1390 63.5
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1682.2 1391 63.4
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1680.2 1395 64.1
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1680.2 1395 63.2
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1680.2 1391 63.4
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1679.5 1393 63.2
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1679.5 1400 63.9
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1675.6 1394 64.5
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1671.8 1393 62.8
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1667.9 1395 62.8
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1666.4 1427 64.2
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1665.2 1412 62.5
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1653.6 1391 62.1
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1648.3 1420 61.6
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1629.4 1323 65.4
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1627.1 1390 62.2
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1625.5 1396 61.5
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1622.1 1397 62.4
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1621.7 1390 62.6
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1620.9 1396 62.8
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1614.0 1390 62.0
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1602.4 1392 62.1
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1595.5 1392 61.0
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1593.9 1391 61.7
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1590.9 1386 60.8
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1585.5 1391 61.3
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1580.8 1393 61.2
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1578.5 1389 60.4
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1575.1 1389 60.3
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1569.7 1393 59.9
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1568.1 1396 60.0
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1557.7 1421 59.3
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1552.0 1396 59.7
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1535.8 1386 59.3
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1502.6 1252 64.3
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1477.2 1365 58.2
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1471.1 1393 57.9
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1465.7 1198 63.3
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1458.0 1393 56.1
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1457.2 1198 62.9
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1449.5 1393 57.2
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1447.2 1400 57.0
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1443.7 1335 57.9
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1439.9 1399 56.7
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1439.5 1394 57.0
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1436.8 1394 56.8
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1433.3 1406 56.3
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1431.4 1398 56.6
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1430.6 1406 56.5
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1427.9 1394 56.3
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1425.6 1400 56.5
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1411.7 1336 57.5
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1411.4 1391 55.2
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1406.0 1395 55.9
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1403.7 1396 55.7
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1314.7 1387 51.8
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1253.0 1396 50.3
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 0.0e+00 1250.7 1315 57.6
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1157.9 815 74.6
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 1.3e-287 993.8 1412 43.4
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 3.3e-254 882.9 1119 46.7
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 2.1e-237 827.0 694 62.8
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 7.6e-211 738.8 646 61.0
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.4e-188 664.1 1425 33.1
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.7e-178 631.3 555 62.2
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.6e-174 617.5 486 65.4
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 6.8e-159 566.2 543 57.6
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.2e-152 545.4 650 53.5
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 2.8e-152 544.3 429 62.7
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 1.1e-140 505.8 430 58.8
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 4.9e-133 480.3 1376 29.5
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.3e-130 472.2 426 57.5
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.0e-130 471.1 516 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 8.7e-114 416.4 1134 29.7
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 3.6e-112 411.0 343 65.3
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 5.3e-103 380.6 900 34.6
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 3.8e-101 374.4 278 67.3
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 2.3e-90 338.6 305 62.0
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.6e-86 325.1 488 40.8
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 2.5e-84 318.5 215 75.3
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 2.6e-78 298.5 1351 24.9
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.4e-78 298.1 384 45.3
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.3e-74 285.4 163 89.0
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-68 266.2 328 48.5
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.4e-65 254.6 543 37.6
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 7.5e-65 253.8 323 47.1
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.0e-61 241.1 153 78.4
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.0e-43 180.6 112 83.0
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.0e-42 180.3 137 61.3
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-40 172.2 328 37.8
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 3.7e-40 171.8 229 41.9
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 8.3e-40 170.6 208 46.2
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 4.4e-33 148.3 113 67.3
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.3e-26 125.9 228 38.2
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 2.4e-23 115.9 68 76.5
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 1.1e-20 107.1 109 47.7
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.3e-12 77.8 102 44.1
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 9.6e-12 77.4 133 32.3
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 1.2e-11 77.0 195 33.8
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 3.8e-08 65.5 76 48.7
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 8.4e-08 64.3 45 75.6
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 1.6e-06 60.1 117 38.5


User provided reference genes

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