Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.0e-121 439.1 220 100.0
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.0e-121 439.1 220 100.0
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 9.9e-89 330.5 215 80.5
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 8.4e-88 327.4 225 75.6
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 2.1e-86 322.8 229 73.4
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 1.4e-79 300.1 221 69.2
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 1.2e-78 297.0 223 70.0
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.6e-78 295.0 225 70.2
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.0e-77 293.9 229 68.6
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 5.1e-77 291.6 221 68.3
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 5.1e-77 291.6 221 68.3
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 6.7e-77 291.2 199 74.9
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 1.1e-76 290.4 184 82.1
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.5e-76 290.0 239 64.4
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 3.3e-76 288.9 200 73.5
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 3.3e-76 288.9 165 86.1
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 3.3e-76 288.9 160 88.8
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 9.6e-76 287.3 188 76.1
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.3e-75 287.0 249 63.9
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.6e-75 286.6 235 66.4
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 2.8e-75 285.8 160 85.6
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.8e-75 285.8 228 67.5
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 3.7e-75 285.4 225 68.0
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.4e-74 283.5 160 85.0
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 1.8e-74 283.1 224 67.4
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 2.4e-74 282.7 157 84.7
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 3.1e-74 282.3 199 73.4
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 4.1e-74 282.0 160 85.6
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 5.3e-74 281.6 157 85.4
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 5.3e-74 281.6 199 72.9
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 6.9e-74 281.2 157 84.1
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 1.2e-73 280.4 160 84.4
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.5e-73 280.0 166 81.9
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 2.6e-73 279.3 156 86.5
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 2.6e-73 279.3 170 78.8
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 4.5e-73 278.5 160 83.8
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 5.9e-73 278.1 159 83.0
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 7.6e-73 277.7 199 71.9
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 2.2e-72 276.2 198 70.2
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.9e-72 275.8 159 84.9
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 5.0e-72 275.0 155 87.1
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 5.0e-72 275.0 159 82.4
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 6.5e-72 274.6 159 82.4
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 8.5e-72 274.2 159 81.8
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.5e-72 274.2 159 81.8
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.5e-72 274.2 159 81.8
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 8.5e-72 274.2 180 75.6
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 1.1e-71 273.9 205 68.8
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.9e-71 273.1 164 81.1
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 2.5e-71 272.7 210 68.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 2.5e-71 272.7 159 80.5
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 3.2e-71 272.3 185 72.4
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 5.5e-71 271.6 184 76.1
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 7.2e-71 271.2 206 66.5
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.6e-70 270.0 172 75.6
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 2.1e-70 269.6 160 80.6
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 2.7e-70 269.2 154 84.4
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 2.7e-70 269.2 181 74.0
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 2.7e-70 269.2 157 80.3
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 3.6e-70 268.9 159 79.2
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.6e-70 268.5 159 80.5
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 6.1e-70 268.1 183 71.0
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 6.1e-70 268.1 185 72.4
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 7.9e-70 267.7 178 73.6
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 7.9e-70 267.7 184 72.3
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 7.9e-70 267.7 160 80.0
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.3e-69 266.9 178 72.5
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 1.3e-69 266.9 166 78.9
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 3.0e-69 265.8 191 72.3
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 5.1e-69 265.0 160 79.4
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 6.7e-69 264.6 172 73.3
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 8.7e-69 264.2 160 78.1
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 8.7e-69 264.2 160 78.1
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 8.7e-69 264.2 160 78.1
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 8.7e-69 264.2 192 70.3
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 8.7e-69 264.2 161 80.7
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.1e-68 263.8 156 80.1
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 1.1e-68 263.8 156 80.8
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.5e-68 263.5 179 72.6
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.9e-68 263.1 160 77.5
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 1.9e-68 263.1 179 72.6
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 4.3e-68 261.9 169 77.5
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 9.7e-68 260.8 176 71.6
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.3e-67 260.4 160 77.5
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 2.2e-67 259.6 160 76.9
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.8e-67 259.2 160 76.9
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 2.8e-67 259.2 181 72.9
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 3.7e-67 258.8 160 76.2
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 6.3e-67 258.1 164 74.4
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.1e-66 257.3 190 68.9
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 1.1e-66 257.3 224 63.8
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 4.1e-66 255.4 149 80.5
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 9.0e-66 254.2 186 72.0
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 2.0e-65 253.1 154 79.9
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.6e-65 252.7 221 62.9
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 4.5e-65 251.9 198 67.2
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 8.5e-64 247.7 191 66.5
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.4e-63 246.9 151 76.8
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 5.5e-63 245.0 185 65.9
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 2.7e-62 242.7 160 72.5
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 2.7e-62 242.7 160 72.5
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 2.0e-60 236.5 168 69.6
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 7.4e-60 234.6 209 58.4
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 9.7e-60 234.2 157 72.6
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 3.4e-57 225.7 161 70.2
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 1.2e-54 217.2 151 68.2
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 1.2e-54 217.2 160 68.8
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 7.9e-54 214.5 199 54.8
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 5.3e-50 201.8 230 47.0
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 4.5e-49 198.7 140 70.7
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 3.8e-48 195.7 143 61.5
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.6e-46 190.3 144 68.8
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 8.5e-40 167.9 163 52.8
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.5e-39 167.2 87 89.7
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.7e-38 162.2 138 63.8
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.7e-38 162.2 138 63.8
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.6e-30 136.0 85 81.2
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.2e-28 131.0 107 68.2
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-26 124.4 74 82.4
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.9e-24 116.3 104 48.1
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 3.8e-24 115.9 85 67.1
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 5.6e-23 112.1 119 45.4
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 3.6e-22 109.4 116 42.2
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 1.3e-19 100.9 129 38.8
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 4.7e-14 82.4 83 55.4
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 4.7e-14 82.4 82 51.2
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 8.3e-11 71.6 38 81.6
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 9.2e-10 68.2 77 53.2
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 3.5e-09 66.2 71 49.3
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 9.5e-07 58.2 139 30.2
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 1.2e-06 57.8 96 38.5


User provided reference genes

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