Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015923 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 6.4e-35 150.2 76 100.0
CSS0031622 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 6.4e-35 150.2 76 100.0
CiPaw.11G122900 Carya illinoinensis HOM05D002680 ORTHO05D001151 3.6e-14 81.3 51 78.4
vmacro13903 Vaccinium macrocarpon HOM05D002680 ORTHO05D001151 3.6e-14 81.3 51 84.3
TWI15G1123 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 8.9e-13 76.6 51 78.4
Actinidia27327 Actinidia chinensis HOM05D002680 ORTHO05D001151 1.2e-12 76.3 51 74.5
Actinidia22726 Actinidia chinensis HOM05D002680 ORTHO05D001151 2.0e-12 75.5 51 72.5
Cfa022931 Carpinus fangiana HOM05D002680 ORTHO05D001151 7.6e-12 73.6 58 74.1
LjContig00312_ERROPOS870357g0002853 Lotus japonicus HOM05D002680 ORTHO05D001151 1.3e-11 72.8 52 73.1
TWI60G1384 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 1.3e-11 72.8 51 74.5
CSS0015793 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 2.2e-11 72.0 50 70.0
QL02p031030 Quercus lobata HOM05D002680 ORTHO05D001151 2.2e-11 72.0 48 81.2
Actinidia28498 Actinidia chinensis HOM05D002680 ORTHO05D001151 6.4e-11 70.5 50 72.0
Cfa003823 Carpinus fangiana HOM05D002680 ORTHO05D001151 6.4e-11 70.5 50 76.0
Thecc.03G295000 Theobroma cacao HOM05D002680 ORTHO05D001151 1.1e-10 69.7 51 70.6
TAR629G1715 Trochodendron aralioides HOM05D002680 ORTHO05D001151 1.1e-10 69.7 50 76.0
CiPaw.02G039400 Carya illinoinensis HOM05D002680 ORTHO05D001151 2.4e-10 68.6 50 74.0
Atru.chr5.641 Acer truncatum HOM05D002680 ORTHO05D001151 4.1e-10 67.8 50 72.0
Duzib138G1059 Durio zibethinus HOM05D002680 ORTHO05D001151 4.1e-10 67.8 50 74.0
Rhsim07G0083000 Rhododendron simsii HOM05D002680 ORTHO05D001151 4.1e-10 67.8 49 71.4
Thecc.01G345200 Theobroma cacao HOM05D002680 ORTHO05D001151 4.1e-10 67.8 50 74.0
COL.COLO4_06311 Corchorus olitorius HOM05D002680 ORTHO05D001151 5.4e-10 67.4 49 75.5
QL04p056804 Quercus lobata HOM05D002680 ORTHO05D001151 5.4e-10 67.4 50 74.0
Prupe.2G185200 Prunus persica HOM05D002680 ORTHO05D001151 9.2e-10 66.6 50 72.0
Nn3g19058 Nelumbo nucifera HOM05D002680 ORTHO05D001151 1.2e-09 66.2 50 72.0
CSS0017773 Camellia sinensis var. sinensis HOM05D002680 ORTHO05D001151 2.1e-09 65.5 50 68.0
Cpa.g.c29502 Carica papaya HOM05D002680 ORTHO05D001151 2.1e-09 65.5 50 68.0
GSVIVG01027071001 Vitis vinifera HOM05D002680 ORTHO05D001151 2.7e-09 65.1 50 72.0
Gohir.A11G096200 Gossypium hirsutum HOM05D002680 ORTHO05D001151 3.5e-09 64.7 50 70.0
FvH4_7g16170 Fragaria vesca HOM05D002680 ORTHO05D001151 6.0e-09 63.9 48 72.9
RcHm_v2.0_Chr1g0359121 Rosa chinensis HOM05D002680 ORTHO05D001151 6.0e-09 63.9 48 72.9
AL136U10030 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 7.8e-09 63.5 48 68.8
AT2G46410 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 7.8e-09 63.5 51 64.7
Carub.0004s2911 Capsella rubella HOM05D002680 ORTHO05D001151 7.8e-09 63.5 51 64.7
CiPaw.01G074100 Carya illinoinensis HOM05D002680 ORTHO05D001151 7.8e-09 63.5 50 68.0
Dinv28333 Davidia involucrata HOM05D002680 ORTHO05D001151 7.8e-09 63.5 51 60.8
Duzib133G0158 Durio zibethinus HOM05D002680 ORTHO05D001151 7.8e-09 63.5 50 70.0
Thhalv10001695m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 7.8e-09 63.5 51 64.7
Nn1g01828 Nelumbo nucifera HOM05D002680 ORTHO05D001151 7.8e-09 63.5 51 70.6
Sp4g28430 Schrenkiella parvula HOM05D002680 ORTHO05D001151 7.8e-09 63.5 51 64.7
Aqoxy5G04173 Aquilegia oxysepala HOM05D002680 ORTHO05D001151 1.7e-08 62.4 51 64.7
Dinv38846 Davidia involucrata HOM05D002680 ORTHO05D001151 1.7e-08 62.4 74 48.6
Eucgr.D02360 Eucalyptus grandis HOM05D002680 ORTHO05D001151 1.7e-08 62.4 50 66.0
Gohir.D11G100900 Gossypium hirsutum HOM05D002680 ORTHO05D001151 1.7e-08 62.4 50 68.0
Gorai.007G107400 Gossypium raimondii HOM05D002680 ORTHO05D001151 1.7e-08 62.4 50 68.0
PGR042G1737 Punica granatum HOM05D002680 ORTHO05D001151 1.7e-08 62.4 49 69.4
arahy.Tifrunner.gnm1.ann1.SWV57T Arachis hypogaea HOM05D002680 ORTHO05D001151 2.3e-08 62.0 47 68.1
arahy.Tifrunner.gnm1.ann1.XL6SY1 Arachis hypogaea HOM05D002680 ORTHO05D001151 2.3e-08 62.0 47 68.1
CARHR141690 Cardamine hirsuta HOM05D002680 ORTHO05D001151 2.3e-08 62.0 50 64.0
PGR031G2198 Punica granatum HOM05D002680 ORTHO05D001151 2.3e-08 62.0 49 67.3
Atru.chr1.254 Acer truncatum HOM05D002680 ORTHO05D001151 3.0e-08 61.6 49 63.3
Aa31LG1G27750 Aethionema arabicum HOM05D002680 ORTHO05D001151 3.0e-08 61.6 51 62.7
AL4G25290 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 3.0e-08 61.6 48 66.7
AT2G30420 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 3.0e-08 61.6 44 70.5
BcaC01g05068 Brassica carinata HOM05D002680 ORTHO05D001151 3.9e-08 61.2 51 60.8
A03p25640 Brassica napus HOM05D002680 ORTHO05D001151 3.9e-08 61.2 51 60.8
BraA03t11779Z Brassica rapa HOM05D002680 ORTHO05D001151 3.9e-08 61.2 51 60.8
Duzib084G1355 Durio zibethinus HOM05D002680 ORTHO05D001151 3.9e-08 61.2 52 69.2
Manes.05G024900 Manihot esculenta HOM05D002680 ORTHO05D001151 3.9e-08 61.2 50 64.0
BcaB01g04232 Brassica carinata HOM05D002680 ORTHO05D001151 5.1e-08 60.8 49 67.3
Potri.002G168900 Populus trichocarpa HOM05D002680 ORTHO05D001151 5.1e-08 60.8 61 59.0
Potri.014G096300 Populus trichocarpa HOM05D002680 ORTHO05D001151 5.1e-08 60.8 50 64.0
A03p15300 Brassica napus HOM05D002680 ORTHO05D001151 6.6e-08 60.5 49 67.3
BolC3t14195H Brassica oleracea HOM05D002680 ORTHO05D001151 6.6e-08 60.5 49 67.3
BraA03t10823Z Brassica rapa HOM05D002680 ORTHO05D001151 6.6e-08 60.5 49 67.3
CDE02G2614 Ceratophyllum demersum HOM05D002680 ORTHO05D001151 6.6e-08 60.5 50 68.0
Eucgr.E00069 Eucalyptus grandis HOM05D002680 ORTHO05D001151 6.6e-08 60.5 50 64.0
Gohir.A07G138700 Gossypium hirsutum HOM05D002680 ORTHO05D001151 6.6e-08 60.5 50 66.0
Gohir.D07G143800 Gossypium hirsutum HOM05D002680 ORTHO05D001151 6.6e-08 60.5 50 66.0
Gorai.001G155700 Gossypium raimondii HOM05D002680 ORTHO05D001151 6.6e-08 60.5 50 66.0
Lalb_Chr09g0320681 Lupinus albus HOM05D002680 ORTHO05D001151 6.6e-08 60.5 53 64.2
GSVIVG01028716001 Vitis vinifera HOM05D002680 ORTHO05D001151 6.6e-08 60.5 51 64.7
AL8G27860 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 8.7e-08 60.1 49 67.3
CARHR123870 Cardamine hirsuta HOM05D002680 ORTHO05D001151 8.7e-08 60.1 49 63.3
Aa31LG3G9280 Aethionema arabicum HOM05D002680 ORTHO05D001151 1.1e-07 59.7 34 82.4
BcaB06g29488 Brassica carinata HOM05D002680 ORTHO05D001151 1.1e-07 59.7 51 58.8
A04p34360 Brassica napus HOM05D002680 ORTHO05D001151 1.1e-07 59.7 51 58.8
C04p72160 Brassica napus HOM05D002680 ORTHO05D001151 1.1e-07 59.7 51 58.8
BolC4t28704H Brassica oleracea HOM05D002680 ORTHO05D001151 1.1e-07 59.7 51 58.8
BraA04t18897Z Brassica rapa HOM05D002680 ORTHO05D001151 1.1e-07 59.7 51 58.8
Dinv18728 Davidia involucrata HOM05D002680 ORTHO05D001151 1.1e-07 59.7 50 66.0
Thhalv10015741m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 1.1e-07 59.7 34 82.4
BcaC01g06229 Brassica carinata HOM05D002680 ORTHO05D001151 1.5e-07 59.3 48 64.6
BcaC02g07029 Brassica carinata HOM05D002680 ORTHO05D001151 1.5e-07 59.3 51 56.9
C03p17900 Brassica napus HOM05D002680 ORTHO05D001151 1.5e-07 59.3 48 64.6
BolC3t15409H Brassica oleracea HOM05D002680 ORTHO05D001151 1.5e-07 59.3 51 58.8
Carub.0004s1158 Capsella rubella HOM05D002680 ORTHO05D001151 1.5e-07 59.3 49 61.2
Eucgr.E00851 Eucalyptus grandis HOM05D002680 ORTHO05D001151 1.5e-07 59.3 51 58.8
Sabra15G0016400 Salix brachista HOM05D002680 ORTHO05D001151 1.5e-07 59.3 51 62.7
vmacro13176 Vaccinium macrocarpon HOM05D002680 ORTHO05D001151 1.5e-07 59.3 52 63.5
PSO135G1041 Papaver somniferum HOM05D002680 ORTHO05D001151 1.9e-07 58.9 51 60.8
PSO384G2121 Papaver somniferum HOM05D002680 ORTHO05D001151 1.9e-07 58.9 51 60.8
Sabra02G0143100 Salix brachista HOM05D002680 ORTHO05D001151 1.9e-07 58.9 50 64.0
TPR.G6611 Trifolium pratense HOM05D002680 ORTHO05D001151 1.9e-07 58.9 52 59.6
FAN10G0893 Fragaria x ananassa HOM05D002680 ORTHO05D001151 2.5e-07 58.5 51 62.7
FAN10G1630 Fragaria x ananassa HOM05D002680 ORTHO05D001151 2.5e-07 58.5 51 62.7
BcaB06g29487 Brassica carinata HOM05D002680 ORTHO05D001151 3.3e-07 58.2 51 56.9
A10p10710 Brassica napus HOM05D002680 ORTHO05D001151 3.3e-07 58.2 49 65.3
C09p42990 Brassica napus HOM05D002680 ORTHO05D001151 3.3e-07 58.2 49 65.3
BraA10t43152Z Brassica rapa HOM05D002680 ORTHO05D001151 3.3e-07 58.2 49 65.3
Carub.0005s2840 Capsella rubella HOM05D000008 ORTHO05D001151 3.3e-07 58.2 71 47.9
Carub.0008s1340 Capsella rubella HOM05D002680 ORTHO05D001151 3.3e-07 58.2 49 65.3
Ca_24518_v3 Cicer arietinum L. HOM05D002680 ORTHO05D001151 3.3e-07 58.2 52 57.7
FAN03G1631 Fragaria x ananassa HOM05D002680 ORTHO05D001151 3.3e-07 58.2 49 67.3
Manes.06G157500 Manihot esculenta HOM05D002680 ORTHO05D001151 3.3e-07 58.2 45 62.2
Sp6g15380 Schrenkiella parvula HOM05D002680 ORTHO05D001151 3.3e-07 58.2 49 65.3
THA.LOC104827629 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 3.3e-07 58.2 50 62.0
AT5G53200 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 4.3e-07 57.8 49 65.3
BcaC02g12684 Brassica carinata HOM05D002680 ORTHO05D001151 4.3e-07 57.8 51 56.9
BcaC02g12686 Brassica carinata HOM05D002680 ORTHO05D001151 4.3e-07 57.8 51 56.9
BcaC02g12805 Brassica carinata HOM05D002680 ORTHO05D001151 4.3e-07 57.8 51 56.9
A05p01360 Brassica napus HOM05D002680 ORTHO05D001151 4.3e-07 57.8 51 56.9
C04p01540 Brassica napus HOM05D002680 ORTHO05D001151 4.3e-07 57.8 51 56.9
BolC4t21805H Brassica oleracea HOM05D002680 ORTHO05D001151 4.3e-07 57.8 51 56.9
BraA02t06184Z Brassica rapa HOM05D002680 ORTHO05D001151 4.3e-07 57.8 49 67.3
BraA05t19134Z Brassica rapa HOM05D002680 ORTHO05D001151 4.3e-07 57.8 51 56.9
Duzib068G0060 Durio zibethinus HOM05D002680 ORTHO05D001151 4.3e-07 57.8 50 58.0
BcaC03g14444 Brassica carinata HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 65.3
BcaC07g42358 Brassica carinata HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 57.1
A09p69090 Brassica napus HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 57.1
C02p18580 Brassica napus HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 65.3
C08p53660 Brassica napus HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 57.1
BolC2t08000H Brassica oleracea HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 65.3
BolC8t52880H Brassica oleracea HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 57.1
BraA09t42246Z Brassica rapa HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 57.1
THA.LOC104811933 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 63.3
TWI14G1015 Tripterygium wilfordii HOM05D002680 ORTHO05D001151 5.6e-07 57.4 49 61.2
A09p13820 Brassica napus HOM05D000162 ORTHO05D000090 7.3e-07 57.0 64 50.0
CiPaw.05G257600 Carya illinoinensis HOM05D002680 ORTHO05D001151 7.3e-07 57.0 51 60.8
Ciclev10006315m.g Citrus clementina HOM05D002680 ORTHO05D001151 7.3e-07 57.0 49 63.3
FvH4_7g31070 Fragaria vesca HOM05D002680 ORTHO05D001151 7.3e-07 57.0 51 62.7
FAN06G0339 Fragaria x ananassa HOM05D002680 ORTHO05D001151 7.3e-07 57.0 51 62.7
FAN06G1775 Fragaria x ananassa HOM05D002680 ORTHO05D001151 7.3e-07 57.0 48 64.6
FAN06G4252 Fragaria x ananassa HOM05D002680 ORTHO05D001151 7.3e-07 57.0 51 62.7
Manes.01G247600 Manihot esculenta HOM05D002680 ORTHO05D001151 7.3e-07 57.0 50 62.0
Sabra12G0020800 Salix brachista HOM05D002680 ORTHO05D001151 7.3e-07 57.0 51 56.9
Thecc.03G193400 Theobroma cacao HOM05D002680 ORTHO05D001151 7.3e-07 57.0 49 63.3
Aa31LG1G10950 Aethionema arabicum HOM05D002680 ORTHO05D001151 9.6e-07 56.6 55 58.2
Potri.015G022000 Populus trichocarpa HOM05D002680 ORTHO05D001151 9.6e-07 56.6 48 58.3
A01p19340 Brassica napus HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
C01p24300 Brassica napus HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
C01p24320 Brassica napus HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
C01p24340 Brassica napus HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
C01p24380 Brassica napus HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
C01p24400 Brassica napus HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
BolC1t02386H Brassica oleracea HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
BraA01t01875Z Brassica rapa HOM05D002680 ORTHO05D001151 1.2e-06 56.2 34 73.5
Carub.0004s1159 Capsella rubella HOM05D002680 ORTHO05D001151 1.2e-06 56.2 53 60.4
Cfa016365 Carpinus fangiana HOM05D002680 ORTHO05D001151 1.2e-06 56.2 49 65.3
CDE08G1645 Ceratophyllum demersum HOM05D000257 ORTHO05D003333 1.2e-06 56.2 50 64.0
Thhalv10017480m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 1.2e-06 56.2 48 64.6
MD06G1104200 Malus domestica HOM05D002680 ORTHO05D001151 1.2e-06 56.2 52 53.8
Potri.012G031200 Populus trichocarpa HOM05D002680 ORTHO05D001151 1.2e-06 56.2 54 61.1
RcHm_v2.0_Chr1g0380141 Rosa chinensis HOM05D002680 ORTHO05D001151 1.2e-06 56.2 51 60.8
AT2G30432 Arabidopsis thaliana HOM05D002680 ORTHO05D001151 1.6e-06 55.8 35 71.4
A03p17020 Brassica napus HOM05D002680 ORTHO05D001151 1.6e-06 55.8 48 58.3
FAN01G1254 Fragaria x ananassa HOM05D002680 ORTHO05D001151 1.6e-06 55.8 49 61.2
Glyma.01G224900 Glycine max HOM05D002680 ORTHO05D001151 1.6e-06 55.8 40 65.0
Glyma.11G018200 Glycine max HOM05D002680 ORTHO05D001151 1.6e-06 55.8 40 65.0
SalBow5G2861 Salvia bowleyana HOM05D002680 ORTHO05D001151 1.6e-06 55.8 50 62.0
Sp1g00910 Schrenkiella parvula HOM05D002680 ORTHO05D001151 1.6e-06 55.8 52 57.7
THA.LOC104825134 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 1.6e-06 55.8 49 61.2
C03p20080 Brassica napus HOM05D002680 ORTHO05D001151 2.1e-06 55.5 49 57.1
BolC3t14385H Brassica oleracea HOM05D002680 ORTHO05D001151 2.1e-06 55.5 49 57.1
Ciclev10024111m.g Citrus clementina HOM05D002680 ORTHO05D001151 2.1e-06 55.5 50 60.0
Prupe.2G307600 Prunus persica HOM05D002680 ORTHO05D001151 2.1e-06 55.5 51 58.8
Aqoxy7G00139 Aquilegia oxysepala HOM05D002680 ORTHO05D001151 2.8e-06 55.1 50 58.0
AL5G44160 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 3.6e-06 54.7 50 58.0
Carub.0004s1160 Capsella rubella HOM05D002680 ORTHO05D001151 4.7e-06 54.3 48 54.2
Migut.N01558 Erythranthe guttata HOM05D002680 ORTHO05D001151 4.7e-06 54.3 50 56.0
Thhalv10009233m.g Eutrema salsugineum HOM05D002680 ORTHO05D001151 4.7e-06 54.3 54 50.0
AL4G25310 Arabidopsis lyrata HOM05D002680 ORTHO05D001151 6.2e-06 53.9 46 63.0
A08p20290 Brassica napus HOM05D002680 ORTHO05D001151 6.2e-06 53.9 40 65.0
Cpa.g.sc3.55 Carica papaya HOM05D002680 ORTHO05D001151 6.2e-06 53.9 49 57.1
CDE10G0523 Ceratophyllum demersum HOM05D002680 ORTHO05D001151 6.2e-06 53.9 45 62.2
MELO3C034013.2 Cucumis melo HOM05D002680 ORTHO05D001151 6.2e-06 53.9 46 54.3
AT4G01060 Arabidopsis thaliana HOM05D000008 ORTHO05D001151 8.1e-06 53.5 53 49.1
BcaB08g35682 Brassica carinata HOM05D002680 ORTHO05D001151 8.1e-06 53.5 33 72.7
A09p00220 Brassica napus HOM05D000008 ORTHO05D001151 8.1e-06 53.5 54 55.6
CARHR249240 Cardamine hirsuta HOM05D000008 ORTHO05D001151 8.1e-06 53.5 48 52.1
COL.COLO4_35651 Corchorus olitorius HOM05D002680 ORTHO05D001151 8.1e-06 53.5 51 54.9
SHI13236 Sapria himalayana HOM05D002680 ORTHO05D001151 8.1e-06 53.5 31 77.4
Sed0019152 Sechium edule HOM05D002680 ORTHO05D001151 8.1e-06 53.5 48 56.2
THA.LOC104800287 Tarenaya hassleriana HOM05D002680 ORTHO05D001151 8.1e-06 53.5 49 57.1


User provided reference genes

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