Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-265 919.5 515 100.0
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-185 651.7 492 71.5
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.4e-178 628.2 518 73.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.0e-176 622.5 518 72.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.3e-175 618.6 478 70.9
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.6e-164 582.8 520 68.8
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 9.3e-154 547.7 518 67.2
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-153 545.8 333 82.9
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.5e-153 545.8 579 53.5
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.0e-140 503.4 518 57.1
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.4e-138 497.3 518 62.7
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.4e-138 497.3 520 62.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 2.5e-138 496.5 518 62.2
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 7.1e-138 495.0 518 62.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.1e-135 487.6 505 62.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.2e-134 481.9 520 61.2
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.8e-133 480.3 518 61.8
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.9e-131 473.0 518 60.0
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 6.7e-128 461.8 518 59.7
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 4.1e-125 452.6 518 56.9
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.0e-124 450.3 518 56.8
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.9e-123 446.4 518 58.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 8.5e-123 444.9 518 56.2
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.7e-121 439.9 517 56.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 3.6e-121 439.5 515 57.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.0e-120 436.4 516 56.0
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.1e-119 434.5 520 50.4
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.1e-119 434.5 518 55.6
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.7e-119 432.2 518 57.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.4e-119 431.8 516 57.8
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.8e-118 429.9 518 57.5
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.7e-118 429.5 513 56.9
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.7e-118 429.5 520 56.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.8e-118 429.1 518 57.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-117 427.9 518 56.6
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.8e-117 427.2 518 56.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 5.3e-117 425.6 518 56.8
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.2e-116 424.5 518 55.6
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.0e-116 423.7 520 57.1
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.7e-116 421.8 526 56.5
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.3e-115 421.0 526 56.5
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.0e-115 419.1 515 55.0
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 5.0e-115 419.1 518 56.2
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.6e-113 412.9 519 55.7
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 4.7e-113 412.5 520 54.6
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 7.9e-113 411.8 527 54.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.0e-112 411.4 517 54.0
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.0e-112 411.4 518 48.5
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 5.1e-112 409.1 518 54.4
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.3e-111 406.4 518 54.8
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.3e-111 406.4 513 49.5
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 7.4e-111 405.2 517 55.1
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.8e-110 403.3 518 48.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 4.8e-110 402.5 517 54.4
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 4.8e-110 402.5 485 57.9
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 5.3e-109 399.1 518 54.1
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.5e-108 397.5 518 53.1
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.5e-108 397.5 521 52.8
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.3e-107 394.4 518 54.2
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.7e-107 394.0 519 54.7
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.2e-107 393.7 517 54.5
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 5.0e-107 392.5 473 58.6
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.5e-107 392.1 569 45.5
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 6.5e-107 392.1 519 54.3
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 6.5e-107 392.1 524 51.9
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-106 391.3 518 54.2
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 2.5e-106 390.2 517 52.6
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.2e-105 387.9 555 50.3
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.4e-104 384.4 518 52.5
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 8.8e-104 381.7 519 54.3
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 3.3e-103 379.8 517 52.2
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.7e-103 378.3 515 45.0
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 6.3e-102 375.6 521 54.5
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.2e-100 371.3 518 51.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.0e-100 370.5 519 53.2
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.6e-100 370.2 519 52.0
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.3e-99 367.9 518 51.7
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 6.5e-99 365.5 518 51.9
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.5e-98 363.6 518 51.0
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 3.2e-98 363.2 519 52.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 5.5e-98 362.5 518 51.4
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.7e-97 359.4 523 53.2
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.6e-95 353.6 513 52.8
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 3.7e-94 349.7 517 52.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 3.1e-93 346.7 514 52.3
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 7.0e-93 345.5 516 50.0
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.2e-92 344.7 522 40.4
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 2.7e-92 343.6 516 51.7
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.5e-92 343.2 513 52.4
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 4.5e-92 342.8 513 53.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.3e-91 341.3 514 52.5
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-91 340.9 514 52.1
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-91 340.9 516 51.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 6.5e-91 339.0 514 52.3
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 6.5e-91 339.0 517 49.9
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.1e-90 338.2 548 47.3
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.5e-90 337.8 516 52.5
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.5e-90 337.0 513 52.0
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 9.4e-90 335.1 513 51.1
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 9.4e-90 335.1 519 48.4
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-89 334.7 516 51.4
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-89 334.7 514 52.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-87 327.8 515 51.5
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.7e-86 323.2 513 50.7
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.1e-85 320.1 517 47.4
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 5.0e-83 312.8 464 43.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.1e-82 311.6 528 46.0
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.5e-82 311.2 520 47.7
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.2e-82 309.7 515 44.3
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 5.5e-82 309.3 503 49.3
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.7e-75 287.7 520 37.9
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.5e-74 284.6 515 47.4
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.5e-74 283.9 530 37.5
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 4.4e-71 273.1 423 49.9
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 6.0e-68 262.7 535 38.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.3e-66 256.9 525 44.6
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.4e-64 251.5 332 44.9
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.8e-64 251.1 518 33.8
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.5e-63 248.1 517 34.4
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.3e-58 229.9 541 36.0
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.2e-57 226.1 257 68.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-49 201.4 274 55.8
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 3.1e-48 197.2 291 42.6
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 2.3e-43 181.0 133 67.7
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-42 177.2 97 90.7
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 6.2e-41 172.9 344 36.3
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 7.6e-39 166.0 536 37.9
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 4.9e-38 163.3 133 60.9
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-35 155.6 97 83.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.3e-34 150.6 230 38.7
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.6e-31 141.0 105 69.5
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.9e-31 139.0 128 56.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.7e-30 138.3 349 33.5
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.2e-29 134.0 400 33.8
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.7e-28 131.0 126 57.9
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 3.5e-28 130.6 137 54.0
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 3.5e-28 130.6 110 59.1
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.1e-26 125.6 141 51.1
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-26 125.2 129 50.4
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.9e-26 124.8 136 49.3
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 4.0e-24 117.1 121 52.1
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.2e-23 115.5 101 57.4
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 7.9e-20 102.8 71 66.2
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.5e-18 97.8 242 33.1
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.1e-17 94.7 163 38.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.9e-13 81.6 100 46.0
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.0e-11 75.9 70 60.0
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 5.1e-11 73.6 133 32.3
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 6.7e-11 73.2 347 24.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 8.7e-11 72.8 69 59.4
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 4.3e-10 70.5 115 40.0
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.8e-09 67.8 271 28.0
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.8e-08 65.1 35 80.0
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 3.1e-08 64.3 137 32.1
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.5e-07 60.5 35 71.4
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.5e-07 60.5 35 71.4
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 5.9e-07 60.1 90 44.4
Lalb_Chr04g0252791 Lupinus albus HOM05D003682 ORTHO05D004224 5.0e-06 57.0 84 36.9
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 6.5e-06 56.6 143 35.7
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 8.5e-06 56.2 52 57.7


User provided reference genes

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