Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.5e-242 841.6 412 100.0
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.6e-177 626.3 411 72.0
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.0e-175 619.4 417 69.5
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.0e-171 607.1 417 70.0
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.5e-170 603.2 408 70.8
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.1e-168 595.5 411 67.9
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 5.3e-168 594.7 408 69.1
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 5.3e-168 594.7 408 69.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.2e-167 593.6 394 70.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 2.0e-167 592.8 408 68.6
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.9e-166 589.0 411 67.2
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 5.0e-166 588.2 409 66.7
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 8.4e-166 587.4 409 67.2
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 5.5e-165 584.7 410 66.6
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 1.2e-164 583.6 411 68.1
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 2.1e-164 582.8 413 67.3
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 6.1e-164 581.3 390 69.5
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 7.9e-164 580.9 407 67.6
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.8e-163 579.7 410 67.8
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 6.7e-163 577.8 408 65.4
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 6.7e-163 577.8 408 66.7
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 6.7e-163 577.8 408 67.2
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.9e-162 576.2 410 67.3
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.5e-162 575.9 409 67.5
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.5e-162 575.9 409 67.5
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.5e-162 575.9 409 67.5
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 4.3e-162 575.1 408 68.4
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 5.7e-162 574.7 409 67.5
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 5.7e-162 574.7 408 65.4
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 7.4e-162 574.3 410 67.3
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 9.7e-162 573.9 408 68.1
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 9.7e-162 573.9 403 67.5
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 9.7e-162 573.9 407 65.4
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.3e-161 573.5 409 67.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.2e-161 572.8 401 67.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 2.8e-161 572.4 408 67.2
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.8e-161 572.4 407 65.8
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 3.7e-161 572.0 403 66.7
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.8e-161 571.6 403 66.7
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 6.3e-161 571.2 403 66.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.4e-160 570.1 403 67.0
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 4.1e-160 568.5 411 66.9
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 6.9e-160 567.8 410 65.9
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.5e-159 566.6 408 65.4
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 2.6e-159 565.8 410 66.3
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.6e-159 565.8 409 66.0
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 4.5e-159 565.1 407 64.6
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.9e-158 562.4 404 65.6
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.0e-158 561.6 404 65.6
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 8.5e-158 560.8 404 65.3
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 8.5e-158 560.8 404 65.1
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.1e-157 560.5 409 64.1
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.4e-157 560.1 407 66.1
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.9e-157 559.7 392 66.8
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.9e-157 559.7 410 64.4
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.5e-157 559.3 404 65.3
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 3.2e-157 558.9 408 64.0
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.4e-157 557.4 407 65.4
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-156 557.0 407 65.4
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.6e-156 555.4 407 65.1
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.1e-156 554.7 404 65.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.4e-155 553.5 404 65.8
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 2.3e-155 552.7 398 65.6
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 3.0e-155 552.4 407 63.9
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.0e-155 552.4 396 65.9
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 6.7e-155 551.2 404 65.3
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 8.8e-155 550.8 396 65.7
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 2.0e-154 549.7 408 63.0
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 9.7e-154 547.4 404 64.1
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.7e-153 546.6 408 63.2
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.8e-153 545.8 404 64.4
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.1e-152 543.9 407 63.9
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.4e-152 543.5 403 64.0
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 6.9e-152 541.2 418 61.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 2.0e-151 539.7 408 61.8
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.6e-151 539.3 408 62.0
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 4.5e-151 538.5 407 63.4
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 4.5e-151 538.5 406 61.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.7e-150 536.6 404 63.1
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 6.5e-150 534.6 409 61.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.2e-149 531.9 417 63.3
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 5.5e-149 531.6 408 63.0
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 7.2e-149 531.2 399 62.4
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 9.4e-149 530.8 418 61.2
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.6e-148 530.0 401 63.3
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 2.1e-148 529.6 408 63.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 4.7e-148 528.5 407 62.4
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.4e-147 526.9 400 61.8
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.4e-147 526.9 399 62.2
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 5.1e-147 525.0 405 61.5
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 6.7e-147 524.6 400 62.0
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.1e-146 523.9 419 60.1
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 3.7e-145 518.8 403 62.3
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.8e-145 518.5 387 63.3
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 6.3e-145 518.1 408 62.3
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.1e-144 517.3 392 61.5
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.3e-144 515.0 390 61.8
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 7.0e-144 514.6 391 61.9
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.8e-142 508.8 405 61.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 6.5e-142 508.1 392 61.5
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 2.5e-141 506.1 414 60.1
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 9.4e-141 504.2 406 58.9
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.0e-139 500.7 393 61.3
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.0e-139 500.7 393 61.3
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 4.4e-138 495.4 392 59.9
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.3e-137 493.8 392 59.7
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 3.7e-137 492.3 392 59.4
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-136 490.3 406 60.1
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 9.1e-136 487.6 395 58.5
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 9.1e-136 487.6 386 60.6
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 2.6e-135 486.1 395 58.0
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.6e-135 486.1 390 58.7
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 5.9e-135 485.0 392 58.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.9e-134 482.6 392 58.2
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.8e-131 471.1 375 60.0
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 8.8e-131 471.1 375 60.0
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 3.5e-127 459.1 386 56.7
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 5.9e-127 458.4 412 54.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 5.9e-127 458.4 394 58.1
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.5e-122 441.4 405 55.3
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 3.1e-120 436.0 390 53.3
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 3.1e-120 436.0 410 53.7
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.0e-120 434.9 413 51.6
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.0e-115 419.5 409 50.6
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 3.7e-113 412.5 400 53.2
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.3e-110 403.3 399 51.9
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.5e-109 399.8 375 54.1
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 1.4e-104 384.0 407 47.9
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 2.0e-103 380.2 392 50.3
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 6.6e-102 375.2 411 46.5
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 7.3e-101 371.7 399 47.9
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 2.8e-100 369.8 405 51.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 7.1e-96 355.1 405 44.4
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 8.9e-91 338.2 410 46.6
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.1e-88 331.3 407 46.4
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.9e-85 320.5 408 44.1
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.2e-84 317.8 401 45.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 7.6e-82 308.5 254 57.1
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 7.1e-80 302.0 395 43.3
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.7e-78 297.4 293 51.5
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.4e-75 287.0 409 42.8
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-62 243.8 230 53.0
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 4.3e-61 239.6 187 61.5
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.0e-58 230.7 421 34.0
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.3e-54 217.2 160 60.6
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.4e-38 164.9 322 32.6
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 4.3e-37 159.8 157 51.0
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 8.5e-33 145.6 96 71.9
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.6e-31 140.2 121 53.7
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 4.4e-29 133.3 373 27.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 7.0e-27 125.9 79 72.2
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 4.1e-19 100.1 415 26.7
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 8.5e-09 65.9 40 70.0
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 9.5e-08 62.4 421 25.2
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.6e-07 61.6 419 24.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.6e-07 60.5 223 24.2
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 4.7e-07 60.1 420 24.8
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 6.1e-07 59.7 42 64.3
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 8.0e-07 59.3 42 71.4
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 3.0e-06 57.4 430 24.2
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 8.8e-06 55.8 60 43.3


User provided reference genes

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