Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.2e-226 787.7 408 100.0
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.0e-160 568.5 414 75.1
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.5e-159 566.6 416 74.3
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.9e-157 559.7 424 72.2
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-153 547.0 413 72.4
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-153 547.0 413 72.4
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 8.4e-150 534.3 432 69.2
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 9.3e-149 530.8 418 70.6
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 5.1e-147 525.0 419 70.9
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.7e-147 524.2 415 69.9
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 7.4e-146 521.2 392 70.7
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.0e-139 499.2 392 68.4
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.5e-138 496.1 407 65.1
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 3.3e-138 495.7 395 69.1
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 4.3e-138 495.4 407 65.1
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 5.6e-138 495.0 412 65.0
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 1.6e-137 493.4 427 65.3
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.7e-137 492.3 385 69.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.4e-136 490.3 416 64.4
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-136 490.0 385 69.6
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.8e-136 490.0 412 64.3
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.0e-136 488.8 388 69.6
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 5.3e-136 488.4 412 64.8
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 9.0e-136 487.6 412 63.6
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.6e-135 486.1 394 69.3
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 7.6e-135 484.6 398 69.6
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.8e-134 482.3 391 68.3
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 4.9e-134 481.9 411 64.0
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 8.4e-134 481.1 398 68.6
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 3.2e-133 479.2 425 64.2
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 4.2e-133 478.8 389 68.6
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 5.5e-133 478.4 426 62.7
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 5.5e-133 478.4 401 65.6
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 9.3e-133 477.6 391 67.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.2e-132 477.2 401 65.1
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 3.5e-132 475.7 390 65.9
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 7.9e-132 474.6 408 65.0
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 1.0e-131 474.2 412 65.0
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.3e-131 473.8 419 61.8
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 3.0e-131 472.6 426 62.7
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.9e-131 472.2 422 63.5
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 5.7e-130 468.4 423 61.7
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 5.7e-130 468.4 399 65.2
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 9.7e-130 467.6 418 63.6
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 1.3e-129 467.2 391 67.5
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-128 463.4 402 64.9
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 3.1e-128 462.6 417 61.9
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.4e-127 459.1 402 62.9
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.5e-127 458.8 390 64.1
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.0e-126 457.6 405 62.5
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.0e-126 457.6 407 62.2
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.0e-126 457.6 421 61.8
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.7e-126 456.8 395 65.3
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 2.2e-126 456.4 394 65.0
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.9e-125 453.4 388 64.7
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.5e-125 453.0 390 63.3
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 3.2e-125 452.6 421 61.3
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 9.4e-125 451.1 398 60.6
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.7e-124 449.5 406 61.6
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.7e-124 449.5 403 64.3
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 3.6e-124 449.1 391 63.7
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.6e-124 448.7 391 63.9
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 7.9e-124 448.0 399 61.7
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.0e-123 447.6 301 74.4
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 2.3e-123 446.4 392 62.8
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 3.0e-123 446.0 400 63.0
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.1e-122 444.1 392 61.7
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 4.3e-122 442.2 405 64.7
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.3e-122 442.2 404 63.6
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 9.7e-122 441.0 420 59.8
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.7e-121 440.3 368 67.1
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 1.7e-121 440.3 387 60.7
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.8e-121 439.5 415 58.1
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 8.2e-121 438.0 402 64.4
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.2e-121 438.0 389 61.2
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.1e-120 437.6 405 60.0
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 5.3e-120 435.3 393 61.1
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 6.9e-120 434.9 384 60.2
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 6.9e-120 434.9 384 61.5
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 6.9e-120 434.9 385 61.0
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 9.1e-120 434.5 398 59.8
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-119 433.7 391 61.4
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.5e-119 433.7 409 60.9
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.6e-119 433.0 406 60.1
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 3.4e-119 432.6 312 72.8
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.5e-119 432.2 394 60.2
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 5.9e-119 431.8 398 63.6
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 5.9e-119 431.8 406 60.6
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 7.7e-119 431.4 388 60.3
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.0e-118 431.0 392 60.7
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.7e-118 430.3 380 60.0
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 3.8e-118 429.1 381 62.2
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.8e-118 429.1 385 62.1
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 5.0e-118 428.7 409 57.9
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.0e-118 428.7 410 57.8
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 6.5e-118 428.3 381 60.1
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 8.5e-118 427.9 406 57.6
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.1e-117 427.6 386 60.9
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.4e-117 427.2 381 61.9
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 1.4e-117 427.2 383 60.6
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.5e-117 426.4 383 61.9
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 3.2e-117 426.0 361 64.5
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.2e-117 425.6 402 60.2
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 9.4e-117 424.5 386 59.1
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 1.2e-116 424.1 386 58.8
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 2.1e-116 423.3 408 57.8
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.7e-116 422.9 420 58.3
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.7e-116 422.2 388 62.6
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 6.1e-116 421.8 397 58.2
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 6.1e-116 421.8 386 59.6
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 7.9e-116 421.4 386 60.1
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-115 421.0 379 60.2
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.0e-115 421.0 391 60.6
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.3e-115 419.9 394 60.2
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.1e-114 417.5 383 58.2
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.7e-113 413.7 412 57.3
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.2e-113 413.3 394 58.1
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 4.8e-113 412.1 367 59.4
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 6.3e-113 411.8 382 57.6
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 8.2e-113 411.4 387 57.4
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 8.2e-113 411.4 402 60.4
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.8e-112 410.2 407 55.0
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 3.1e-112 409.5 387 58.1
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 4.1e-112 409.1 388 61.3
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 5.3e-112 408.7 400 60.8
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-111 407.5 386 57.5
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 5.9e-111 405.2 428 56.1
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.0e-110 404.4 318 66.7
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.2e-110 403.3 381 59.3
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.2e-110 403.3 381 60.9
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 2.9e-110 402.9 385 56.4
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.1e-109 401.0 393 60.1
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.9e-109 400.2 381 57.0
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 2.5e-109 399.8 342 62.3
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 5.5e-109 398.7 381 58.5
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 7.2e-109 398.3 381 57.0
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 8.8e-107 391.3 361 59.3
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 9.1e-104 381.3 390 55.4
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.9e-102 376.3 230 80.0
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 3.8e-102 375.9 378 54.5
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 7.2e-101 371.7 382 54.7
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 8.0e-100 368.2 398 52.8
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 4.0e-99 365.9 298 61.4
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 2.6e-98 363.2 402 53.5
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.5e-95 352.8 245 70.6
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 9.1e-88 328.2 350 53.1
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 2.2e-81 307.0 413 44.3
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 2.0e-79 300.4 292 52.4
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 3.9e-78 296.2 389 42.9
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 3.3e-69 266.5 181 72.9
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 7.3e-69 265.4 389 45.0
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 4.7e-60 236.1 375 40.5
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 2.7e-47 193.7 321 41.4
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.7e-46 191.0 216 46.8
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.5e-45 188.0 268 45.9
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 5.4e-40 169.5 117 68.4
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.2e-39 168.3 106 79.2
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.6e-39 167.9 105 76.2
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 3.4e-34 150.2 99 72.7
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 1.5e-26 124.8 249 35.3
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.2e-24 117.1 99 60.6
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 4.6e-23 113.2 106 57.5
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.3e-22 111.7 151 42.4
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.3e-22 111.7 151 42.4
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.3e-21 107.1 307 33.9
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.1e-20 104.4 48 100.0
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.1e-20 104.4 48 100.0
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 3.4e-18 97.1 70 58.6
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 9.3e-16 89.0 249 27.7
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.5e-15 87.0 58 65.5
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 4.3e-13 80.1 52 73.1
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 2.2e-12 77.8 47 74.5
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 3.1e-11 73.9 138 50.7
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 9.0e-11 72.4 40 80.0


User provided reference genes

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