Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 2008.0 1018 100.0
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1816.6 1018 90.3
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1788.1 1019 88.7
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1766.9 1018 87.1
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1766.5 1016 88.1
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1736.5 1067 83.1
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1736.1 1016 86.6
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1694.9 1015 84.3
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1688.7 1017 83.6
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1688.3 1016 83.3
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1681.4 1016 83.2
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1681.4 1016 83.3
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1679.1 1017 83.5
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1673.3 1050 81.3
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1672.9 1019 83.7
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1667.1 1016 82.5
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1666.4 1030 83.1
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1666.0 1017 81.9
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1664.8 1024 83.1
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1659.0 1018 83.1
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1657.9 1023 82.7
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1657.9 1015 83.1
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1657.1 1020 81.6
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1653.6 1017 82.1
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1651.0 1027 81.6
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1638.6 1017 81.5
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1637.9 1023 82.3
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1636.7 1016 81.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1635.2 1020 81.4
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1634.0 1036 80.8
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1632.5 1019 81.4
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1630.9 1017 80.6
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1630.9 1036 80.7
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1024 81.3
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1628.6 1031 80.7
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1628.6 1055 79.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1627.5 1013 82.1
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1626.7 1013 82.1
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1625.1 1017 79.8
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1618.6 1019 80.7
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1617.8 1018 80.4
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1616.3 1028 80.1
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1615.5 1029 80.5
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1611.7 1018 80.4
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1611.3 1017 80.7
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1610.9 1025 80.0
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1609.0 1036 80.1
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1600.9 1017 79.9
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1597.4 1024 79.1
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1595.9 1039 79.0
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1024 80.5
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1015 79.5
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1585.1 1013 79.0
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1580.5 1014 79.2
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1579.3 1023 78.9
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1576.6 1030 78.6
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1572.4 1021 78.7
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1572.4 1012 79.0
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1567.4 1026 78.5
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1026 77.4
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1559.7 1028 77.8
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1558.1 1028 78.1
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1029 77.6
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1019 78.3
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1030 77.9
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1028 77.9
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1028 76.8
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1022 78.3
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1019 78.3
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1027 77.0
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1549.3 1028 76.8
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1549.3 1025 78.2
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1548.5 1013 77.3
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1542.3 1028 76.3
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1541.2 1019 77.6
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1535.8 1023 75.9
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1026 76.6
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1532.3 1026 76.6
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1531.5 1027 75.7
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1531.2 1028 77.0
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1529.6 1023 76.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1528.5 1031 76.3
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1524.2 1020 75.5
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1524.2 1032 75.3
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1524.2 1032 75.3
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1521.5 1025 77.3
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1517.7 1023 75.4
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1516.5 1029 75.5
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1031 74.8
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1031 74.8
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1512.7 1024 77.1
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1512.3 1029 75.3
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1511.5 1024 77.1
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1509.2 1036 75.3
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1508.0 1124 70.4
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1506.9 1067 74.4
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1506.1 1016 75.1
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1502.6 1064 74.4
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1500.7 1030 74.4
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1033 74.3
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1455.7 1024 72.2
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1403.7 1025 71.2
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1402.9 1022 73.3
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1379.8 954 73.6
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1367.8 908 75.8
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1359.0 1015 70.0
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1342.8 1025 69.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1324.3 959 69.0
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1311.6 1013 68.6
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1290.8 1012 66.8
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1280.8 1019 63.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1224.5 820 74.5
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1114.8 1027 57.4
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1113.6 1019 58.5
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1098.2 736 77.3
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.3e-305 1052.4 1026 54.3
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.7e-303 1045.0 603 88.1
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 4.2e-299 1031.6 1030 54.0
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.4e-294 1015.8 714 70.4
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 7.6e-293 1010.7 714 70.6
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-289 999.6 1012 56.4
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 4.7e-274 948.3 1036 52.5
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 3.7e-271 938.7 622 75.1
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.0e-269 932.9 964 56.6
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 5.5e-267 924.9 1041 51.7
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 9.4e-267 924.1 1028 52.3
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 6.3e-247 858.2 556 77.9
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 1.1e-235 820.8 453 89.6
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 1.5e-216 757.3 421 90.0
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.6e-208 729.9 1028 44.9
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 5.3e-193 679.1 437 78.5
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 5.8e-184 649.0 1017 41.6
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.7e-181 640.2 399 78.7
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.6e-176 622.1 481 69.0
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 3.2e-174 616.7 361 84.8
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 3.9e-172 609.8 515 59.8
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 5.9e-168 595.9 1047 37.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 6.1e-165 585.9 454 68.1
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.1e-149 534.3 413 64.9
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.7e-141 506.5 373 70.5
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-140 504.2 367 70.8
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-140 504.2 367 70.8
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 5.2e-140 503.1 508 58.1
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.4e-139 500.0 372 71.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 5.9e-136 489.6 322 75.2
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 2.8e-133 480.7 587 48.2
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 8.0e-133 479.2 566 51.6
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 1.6e-120 438.3 665 41.7
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.1e-118 432.2 1075 30.5
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 4.3e-110 403.7 277 73.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.4e-105 388.7 279 73.1
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.9e-102 378.3 290 67.2
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.0e-91 341.7 195 87.2
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-87 329.3 516 42.4
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.4e-81 308.9 507 37.3
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 7.1e-81 306.6 394 49.2
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.5e-73 280.4 183 77.6
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-71 275.8 417 43.4
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.3e-65 253.1 227 63.4
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.9e-62 245.4 135 88.9
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-59 234.6 222 61.3
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 4.6e-56 224.2 138 79.7
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.0e-55 223.0 307 45.3
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 2.0e-51 208.8 121 86.8
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.0e-50 206.5 162 70.4
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 7.9e-48 196.8 143 72.7
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.3e-45 189.5 191 50.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.9e-41 175.6 201 49.8
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 4.1e-36 157.9 172 55.2
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 4.5e-35 154.5 251 40.6
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.5e-34 150.6 121 64.5
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 8.8e-31 140.2 91 79.1
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 8.5e-26 123.6 265 36.6
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 9.4e-25 120.2 84 66.7
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 6.1e-16 90.9 75 62.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.8e-13 82.0 72 52.8
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 5.4e-12 77.8 77 54.5
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.4e-12 77.8 55 70.9
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.8e-10 71.6 69 49.3
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 6.6e-10 70.9 49 67.3


User provided reference genes

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