Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 8.8e-163 577.0 316 100.0
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.6e-159 565.5 317 98.7
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.2e-106 390.6 257 78.2
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 3.5e-103 379.0 336 61.6
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 6.6e-102 374.8 248 75.4
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 6.6e-102 374.8 321 65.4
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-101 373.6 235 78.7
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 7.3e-101 371.3 233 79.4
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.6e-100 370.2 317 64.7
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 2.8e-100 369.4 243 75.3
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.6e-100 369.0 248 76.6
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 4.7e-100 368.6 255 72.9
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.4e-99 367.1 238 76.9
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 3.1e-99 365.9 307 63.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 3.1e-99 365.9 240 77.1
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 3.1e-99 365.9 237 77.6
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 4.0e-99 365.5 230 78.7
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 5.2e-99 365.2 320 62.5
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 8.9e-99 364.4 321 65.4
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 2.6e-98 362.8 322 63.4
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 5.8e-98 361.7 311 64.6
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.3e-97 360.5 256 75.0
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.3e-97 360.5 324 61.7
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 1.3e-97 360.5 321 63.6
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.7e-97 360.1 237 77.2
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 2.2e-97 359.8 319 61.1
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.7e-97 359.0 235 76.2
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 3.7e-97 359.0 318 63.2
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 4.9e-97 358.6 316 62.3
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 6.4e-97 358.2 244 73.0
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 6.4e-97 358.2 245 75.1
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 6.4e-97 358.2 320 62.8
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 8.3e-97 357.8 324 62.7
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.4e-96 356.3 322 62.4
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.4e-96 356.3 248 73.0
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 3.2e-96 355.9 319 63.0
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 4.1e-96 355.5 244 73.4
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 5.4e-96 355.1 314 62.1
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 7.1e-96 354.8 240 74.6
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 7.1e-96 354.8 244 73.0
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 9.2e-96 354.4 244 73.0
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.6e-95 353.6 254 70.1
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.3e-94 350.5 318 63.2
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 3.0e-94 349.4 233 74.2
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 3.9e-94 349.0 236 74.6
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 5.1e-94 348.6 235 76.6
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 5.1e-94 348.6 315 63.5
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 6.6e-94 348.2 245 73.1
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.1e-93 347.4 239 74.5
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.9e-93 346.7 248 69.4
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 3.3e-93 345.9 319 60.2
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 7.3e-93 344.7 316 61.1
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 7.3e-93 344.7 326 60.4
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.2e-92 344.0 255 70.6
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.1e-92 343.2 243 71.6
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.8e-92 342.8 240 71.7
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 8.1e-92 341.3 241 73.0
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.8e-91 340.1 239 72.4
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.8e-91 340.1 231 74.5
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.8e-91 340.1 313 59.7
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 5.2e-91 338.6 247 71.3
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 6.8e-91 338.2 238 77.7
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 6.8e-91 338.2 312 59.6
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 8.9e-91 337.8 318 60.4
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 8.9e-91 337.8 314 59.6
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.0e-90 336.7 231 73.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 2.0e-90 336.7 306 59.5
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.6e-90 336.3 241 71.8
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.6e-90 336.3 228 74.6
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.4e-90 335.9 241 71.8
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.4e-90 335.9 255 70.2
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-89 334.0 246 68.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.3e-89 334.0 244 68.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.7e-89 333.6 247 68.4
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 3.8e-89 332.4 312 59.3
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 3.8e-89 332.4 247 68.0
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.8e-89 332.4 311 59.2
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.8e-89 332.4 241 71.4
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 4.9e-89 332.0 306 59.2
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 6.4e-89 331.6 311 59.8
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.9e-88 330.1 242 69.0
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.4e-88 329.7 309 57.9
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 2.4e-88 329.7 238 71.4
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 2.4e-88 329.7 237 69.6
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 5.4e-88 328.6 309 59.5
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 9.3e-88 327.8 311 59.2
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 9.3e-88 327.8 239 71.1
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.5e-87 325.9 273 62.6
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 4.6e-87 325.5 237 70.0
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 6.0e-87 325.1 299 59.2
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 4.3e-85 318.9 308 56.8
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 7.3e-85 318.2 315 55.9
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.8e-83 313.5 217 72.8
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 5.3e-83 312.0 259 68.0
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 5.3e-83 312.0 244 65.6
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.9e-81 306.2 219 69.4
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 4.3e-77 292.4 227 65.6
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 8.1e-76 288.1 254 61.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.5e-74 283.9 215 67.9
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 9.9e-74 281.2 231 63.6
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 9.3e-72 274.6 222 68.0
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 3.5e-71 272.7 219 68.0
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.1e-69 267.7 250 56.8
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 8.1e-68 261.5 239 55.6
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 8.4e-65 251.5 231 60.2
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.1e-64 251.1 231 58.9
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 4.2e-64 249.2 190 67.9
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 2.1e-63 246.9 202 65.3
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.1e-63 246.9 202 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 7.9e-63 245.0 210 60.5
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 1.0e-62 244.6 205 62.4
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 2.5e-61 240.0 208 56.2
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 7.4e-61 238.4 212 56.1
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.1e-60 236.9 212 55.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 2.4e-59 233.4 151 74.8
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 5.3e-59 232.3 213 54.5
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 5.8e-58 228.8 212 52.8
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.6e-55 219.2 166 68.1
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.3e-54 216.9 207 58.0
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.3e-53 213.0 169 64.5
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 8.2e-52 208.4 310 45.2
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.7e-36 156.4 120 66.7
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 7.0e-35 152.1 240 37.9
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.2e-34 151.4 210 41.9
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.9e-33 146.7 188 47.9
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 4.5e-26 122.9 112 57.1
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.0e-25 121.7 209 32.5
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 4.0e-22 109.8 65 81.5
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.4e-19 100.5 84 59.5
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.6e-18 97.8 70 67.1
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 6.8e-14 82.4 81 59.3
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-13 81.3 47 78.7
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.5e-13 81.3 46 82.6
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 7.5e-13 79.0 78 57.7
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 3.1e-11 73.6 48 77.1
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 1.3e-09 68.2 70 55.7
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.7e-09 67.8 36 86.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 2.3e-09 67.4 45 75.6
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.6e-07 61.2 51 56.9


User provided reference genes

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