Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030324 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 4.3e-68 261.2 129 100.0
Gohir.D13G039000 Gossypium hirsutum HOM05D001394 ORTHO05D001237 2.5e-23 112.5 98 67.3
Gorai.013G043800 Gossypium raimondii HOM05D001394 ORTHO05D001237 2.5e-23 112.5 98 67.3
Actinidia12949 Actinidia chinensis HOM05D001394 ORTHO05D001237 4.3e-23 111.7 101 65.3
Dinv42158 Davidia involucrata HOM05D001394 ORTHO05D001237 5.6e-23 111.3 103 63.1
Duzib248G0165 Durio zibethinus HOM05D001394 ORTHO05D001237 1.2e-22 110.2 98 66.3
Gohir.A13G040300 Gossypium hirsutum HOM05D001394 ORTHO05D001237 1.2e-22 110.2 98 66.3
Actinidia00440 Actinidia chinensis HOM05D001394 ORTHO05D001237 2.8e-22 109.0 103 64.1
CSS0047656 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 1.4e-21 106.7 98 67.3
CSS0005843 Camellia sinensis var. sinensis HOM05D001394 ORTHO05D001237 2.3e-21 105.9 98 66.3
GSVIVG01031739001 Vitis vinifera HOM05D001394 ORTHO05D001237 5.2e-21 104.8 103 57.3
EL10Ac9g21103 Beta vulgaris HOM05D001394 ORTHO05D001237 6.8e-21 104.4 100 61.0
Lj9C358T2 Lonicera japonica HOM05D001394 ORTHO05D001237 2.0e-20 102.8 102 60.8
Nn1g04859 Nelumbo nucifera HOM05D001394 ORTHO05D001237 2.6e-20 102.4 105 57.1
Actinidia27957 Actinidia chinensis HOM05D001394 ORTHO05D001237 5.7e-20 101.3 107 57.0
Rhsim05G0084500 Rhododendron simsii HOM05D001394 ORTHO05D001237 5.7e-20 101.3 98 62.2
Cpa.g.sc62.10 Carica papaya HOM05D001394 ORTHO05D001237 7.5e-20 100.9 98 59.2
COL.COLO4_32655 Corchorus olitorius HOM05D001394 ORTHO05D001237 7.5e-20 100.9 101 58.4
Duzib132G0032 Durio zibethinus HOM05D001394 ORTHO05D001237 1.3e-19 100.1 98 60.2
Nn5g30318 Nelumbo nucifera HOM05D001394 ORTHO05D001237 1.3e-19 100.1 105 58.1
CiPaw.05G006700 Carya illinoinensis HOM05D001394 ORTHO05D001237 2.9e-19 99.0 103 58.3
DCAR_029057 Daucus carota HOM05D001394 ORTHO05D001237 2.9e-19 99.0 110 53.6
Manes.07G077800 Manihot esculenta HOM05D001394 ORTHO05D001237 2.9e-19 99.0 103 58.3
TAR625G0201 Trochodendron aralioides HOM05D001394 ORTHO05D001237 6.4e-19 97.8 105 57.1
Thecc.02G100900 Theobroma cacao HOM05D001394 ORTHO05D001237 8.3e-19 97.4 101 58.4
CiPaw.06G172400 Carya illinoinensis HOM05D001394 ORTHO05D001237 1.1e-18 97.1 120 52.5
CANSAT25G3592 Cannabis sativa HOM05D001394 ORTHO05D001237 1.4e-18 96.7 112 52.7
vmacro19501 Vaccinium macrocarpon HOM05D001394 ORTHO05D001237 2.4e-18 95.9 100 59.0
Cc02_g18800 Coffea canephora HOM05D001394 ORTHO05D001237 5.4e-18 94.7 101 59.4
Oeu006953.2 Olea europaea HOM05D001394 ORTHO05D001237 7.0e-18 94.4 103 56.3
TWI79G1474 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 7.0e-18 94.4 104 54.8
Oeu025577.1 Olea europaea HOM05D001394 ORTHO05D001237 9.2e-18 94.0 110 54.5
Oeu025578.1 Olea europaea HOM05D001394 ORTHO05D001237 9.2e-18 94.0 110 54.5
Ciclev10028986m.g Citrus clementina HOM05D001394 ORTHO05D001237 1.2e-17 93.6 101 54.5
Manes.10G071500 Manihot esculenta HOM05D001394 ORTHO05D001237 1.6e-17 93.2 101 54.5
Oeu010589.1 Olea europaea HOM05D001394 ORTHO05D001237 2.0e-17 92.8 103 54.4
Sopen01g050450 Solanum pennellii HOM05D001394 ORTHO05D001237 2.7e-17 92.4 107 55.1
QL11p035890 Quercus lobata HOM05D001394 ORTHO05D001237 3.5e-17 92.0 100 57.0
Solyc01g108230.3 Solanum lycopersicum HOM05D001394 ORTHO05D001237 3.5e-17 92.0 107 54.2
TWI31G0875 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 3.5e-17 92.0 97 56.7
PGSC0003DMG400025796 Solanum tuberosum HOM05D001394 ORTHO05D001237 4.6e-17 91.7 100 56.0
Cfa004523 Carpinus fangiana HOM05D000983 ORTHO05D001922 7.8e-17 90.9 122 49.2
MELO3C018448.2 Cucumis melo HOM05D001394 ORTHO05D001237 7.8e-17 90.9 105 52.4
Glyma.02G132400 Glycine max HOM05D001394 ORTHO05D001237 7.8e-17 90.9 122 48.4
Medtr4g086150 Medicago truncatula HOM05D001394 ORTHO05D001237 7.8e-17 90.9 122 48.4
Hund00337 Selenicereus undatus HOM05D001394 ORTHO05D001237 7.8e-17 90.9 102 53.9
VMungo0251G1663 Vigna mungo HOM05D001394 ORTHO05D001237 7.8e-17 90.9 122 48.4
Eucgr.I01150 Eucalyptus grandis HOM05D001394 ORTHO05D001237 1.0e-16 90.5 101 53.5
Glyma.07G212500 Glycine max HOM05D001394 ORTHO05D001237 1.0e-16 90.5 122 48.4
PGR142G3869 Punica granatum HOM05D001394 ORTHO05D001237 1.0e-16 90.5 103 53.4
Nitab4.5_0005249g0070 Nicotiana tabacum HOM05D001394 ORTHO05D001237 1.3e-16 90.1 107 54.2
Peaxi162Scf00152g00020 Petunia axillaris HOM05D001394 ORTHO05D001237 1.3e-16 90.1 100 57.0
Migut.B00349 Erythranthe guttata HOM05D001394 ORTHO05D001237 1.7e-16 89.7 108 52.8
TPR.G25419 Trifolium pratense HOM05D001394 ORTHO05D001237 1.7e-16 89.7 124 46.8
ClCG02G005920 Citrullus lanatus HOM05D001394 ORTHO05D001237 2.3e-16 89.4 105 51.4
MD00G1035400 Malus domestica HOM05D001394 ORTHO05D001237 2.3e-16 89.4 100 54.0
Hund06175 Selenicereus undatus HOM05D001394 ORTHO05D001237 2.3e-16 89.4 98 57.1
Gohir.A12G024100 Gossypium hirsutum HOM05D001394 ORTHO05D001237 3.0e-16 89.0 98 57.1
Gohir.D12G024700 Gossypium hirsutum HOM05D001394 ORTHO05D001237 3.0e-16 89.0 98 57.1
Gorai.008G025000 Gossypium raimondii HOM05D001394 ORTHO05D001237 3.0e-16 89.0 98 57.1
Nitab4.5_0004666g0010 Nicotiana tabacum HOM05D001394 ORTHO05D001237 3.0e-16 89.0 99 55.6
PSO675G1618 Papaver somniferum HOM05D001394 ORTHO05D001237 3.0e-16 89.0 100 55.0
CsaV3_7G008620 Cucumis sativus L. HOM05D001394 ORTHO05D001237 3.9e-16 88.6 105 51.4
Lalb_Chr05g0219171 Lupinus albus HOM05D001394 ORTHO05D001237 3.9e-16 88.6 100 52.0
Phvul.003G292300 Phaseolus vulgaris HOM05D001394 ORTHO05D001237 3.9e-16 88.6 122 47.5
Sed0021733 Sechium edule HOM05D001394 ORTHO05D001237 3.9e-16 88.6 105 51.4
Lsat_1_v5_gn_9_109860 Lactuca sativa HOM05D001394 ORTHO05D001237 5.0e-16 88.2 103 54.4
Migut.J00253 Erythranthe guttata HOM05D001394 ORTHO05D001237 6.6e-16 87.8 103 52.4
Lalb_Chr09g0328331 Lupinus albus HOM05D001394 ORTHO05D001237 6.6e-16 87.8 124 46.8
PSO541G4468 Papaver somniferum HOM05D001394 ORTHO05D001237 6.6e-16 87.8 103 53.4
Migut.N01187 Erythranthe guttata HOM05D001394 ORTHO05D001237 8.6e-16 87.4 103 52.4
RcHm_v2.0_Chr6g0257331 Rosa chinensis HOM05D001394 ORTHO05D001237 8.6e-16 87.4 108 49.1
Atru.chr5.2700 Acer truncatum HOM05D001394 ORTHO05D001237 1.1e-15 87.0 122 47.5
Aa31LG8G6050 Aethionema arabicum HOM05D001394 ORTHO05D001237 1.5e-15 86.7 98 52.0
CAN.G1041.12 Capsicum annuum HOM05D001394 ORTHO05D001237 1.5e-15 86.7 98 56.1
Nitab4.5_0000435g0070 Nicotiana tabacum HOM05D001394 ORTHO05D001237 1.5e-15 86.7 99 54.5
Sabra09G0077800 Salix brachista HOM05D001394 ORTHO05D001237 1.5e-15 86.7 101 56.4
Lj4g0009983 Lotus japonicus HOM05D001394 ORTHO05D001237 2.5e-15 85.9 122 45.9
MD05G1081300 Malus domestica HOM05D001394 ORTHO05D001237 3.3e-15 85.5 100 53.0
Potri.004G141000 Populus trichocarpa HOM05D001394 ORTHO05D001237 3.3e-15 85.5 100 55.0
TWI75G0123 Tripterygium wilfordii HOM05D001394 ORTHO05D001237 3.3e-15 85.5 103 52.4
arahy.Tifrunner.gnm1.ann1.80KEYX Arachis hypogaea HOM05D001394 ORTHO05D001237 4.3e-15 85.1 104 46.2
arahy.Tifrunner.gnm1.ann1.M69XSS Arachis hypogaea HOM05D001394 ORTHO05D001237 4.3e-15 85.1 104 46.2
Psat7g124680 Pisum sativum HOM05D001394 ORTHO05D001237 4.3e-15 85.1 120 45.0
HanXRQChr09g0250401 Helianthus annuus HOM05D001394 ORTHO05D001237 5.6e-15 84.7 103 50.5
Potri.009G101800 Populus trichocarpa HOM05D001394 ORTHO05D001237 5.6e-15 84.7 103 54.4
SGA_v2.0_scaffold13G06596 Striga asiatica HOM05D001394 ORTHO05D001237 5.6e-15 84.7 107 49.5
FvH4_2g06020 Fragaria vesca HOM05D001394 ORTHO05D001237 7.3e-15 84.3 97 52.6
FAN20G2256 Fragaria x ananassa HOM05D000983 ORTHO05D001237 7.3e-15 84.3 97 52.6
FAN24G2118 Fragaria x ananassa HOM05D000983 ORTHO05D001237 7.3e-15 84.3 97 52.6
FAN27G0824 Fragaria x ananassa HOM05D000983 ORTHO05D001922 7.3e-15 84.3 97 52.6
Prupe.8G125600 Prunus persica HOM05D001394 ORTHO05D001237 7.3e-15 84.3 100 55.0
FAN15G1346 Fragaria x ananassa HOM05D000983 ORTHO05D001922 9.5e-15 84.0 100 50.0
Migut.B00348 Erythranthe guttata HOM05D001394 ORTHO05D001237 1.2e-14 83.6 108 49.1
Aqoxy5G01237 Aquilegia oxysepala HOM05D001394 ORTHO05D001237 1.6e-14 83.2 104 49.0
unitig_744.g24235 Utricularia gibba HOM05D001394 ORTHO05D001237 1.6e-14 83.2 108 48.1
MSTRG.27726 Avicennia marina HOM05D001394 ORTHO05D001237 2.1e-14 82.8 103 51.5
CDE03G0237 Ceratophyllum demersum HOM05D001394 ORTHO05D001237 2.1e-14 82.8 104 50.0
MSTRG.16744 Avicennia marina HOM05D001394 ORTHO05D001237 2.8e-14 82.4 101 49.5
HPP92_015302 Vanilla planifolia HOM05D001394 ORTHO05D001237 3.6e-14 82.0 101 50.5
BcaB04g19032 Brassica carinata HOM05D001394 ORTHO05D001237 4.7e-14 81.6 98 49.0
AT3G19260 Arabidopsis thaliana HOM05D001394 ORTHO05D001237 6.2e-14 81.3 98 49.0
AL3G32660 Arabidopsis lyrata HOM05D001394 ORTHO05D001237 8.0e-14 80.9 98 49.0
MSTRG.20156 Avicennia marina HOM05D001394 ORTHO05D001237 8.0e-14 80.9 101 50.5
BcaC09g48881 Brassica carinata HOM05D001394 ORTHO05D001237 8.0e-14 80.9 101 48.5
C01p44850 Brassica napus HOM05D001394 ORTHO05D001237 8.0e-14 80.9 101 48.5
BolC1t04452H Brassica oleracea HOM05D001394 ORTHO05D001237 8.0e-14 80.9 101 48.5
Thhalv10021239m.g Eutrema salsugineum HOM05D001394 ORTHO05D001237 8.0e-14 80.9 98 49.0
CAN.G352.37 Capsicum annuum HOM05D001394 ORTHO05D001237 1.1e-13 80.5 121 47.9
SGA_v2.0_scaffold32G13065 Striga asiatica HOM05D001394 ORTHO05D001237 1.4e-13 80.1 101 48.5
BcaC01g03640 Brassica carinata HOM05D001394 ORTHO05D001237 1.8e-13 79.7 98 48.0
A03p41130 Brassica napus HOM05D001394 ORTHO05D001237 1.8e-13 79.7 98 48.0
C03p50210 Brassica napus HOM05D001394 ORTHO05D001237 1.8e-13 79.7 98 48.0
BolC3t17313H Brassica oleracea HOM05D001394 ORTHO05D001237 1.8e-13 79.7 98 48.0
BraA03t13269Z Brassica rapa HOM05D001394 ORTHO05D001237 1.8e-13 79.7 98 48.0
Eucgr.G01442 Eucalyptus grandis HOM05D001394 ORTHO05D001237 1.8e-13 79.7 98 50.0
Os03g0264000 Oryza sativa ssp. japonica HOM05D001394 ORTHO05D001237 1.8e-13 79.7 98 52.0
Zm00001eb398050 Zea mays HOM05D001394 ORTHO05D001237 2.3e-13 79.3 98 51.0
BcaB04g20714 Brassica carinata HOM05D001394 ORTHO05D001237 4.0e-13 78.6 98 49.0
CDE04G2076 Ceratophyllum demersum HOM05D001394 ORTHO05D001237 4.0e-13 78.6 104 48.1
Sp3g17340 Schrenkiella parvula HOM05D001394 ORTHO05D001237 5.2e-13 78.2 98 48.0
THA.LOC104803454 Tarenaya hassleriana HOM05D001394 ORTHO05D001237 5.2e-13 78.2 108 44.4
Zm00001eb011640 Zea mays HOM05D001394 ORTHO05D001237 6.8e-13 77.8 98 50.0
SalBow3G1259 Salvia bowleyana HOM05D001394 ORTHO05D001237 8.9e-13 77.4 101 47.5
Aa31LG10G4350 Aethionema arabicum HOM05D001394 ORTHO05D001237 1.2e-12 77.0 98 48.0
ECA240G1868 Erigeron canadensis HOM05D001394 ORTHO05D001237 1.2e-12 77.0 103 47.6
Sp1g36520 Schrenkiella parvula HOM05D001394 ORTHO05D001237 1.2e-12 77.0 100 46.0
Carub.0003s1909 Capsella rubella HOM05D001394 ORTHO05D001237 1.5e-12 76.6 98 48.0
CARHR039730 Cardamine hirsuta HOM05D001394 ORTHO05D001237 2.6e-12 75.9 98 45.9
Carub.0001s3888 Capsella rubella HOM05D001394 ORTHO05D001237 3.4e-12 75.5 98 46.9
BcaB06g25983 Brassica carinata HOM05D001394 ORTHO05D001237 4.4e-12 75.1 98 46.9
CARHR094660 Cardamine hirsuta HOM05D001394 ORTHO05D001237 4.4e-12 75.1 98 46.9
BcaC05g28507 Brassica carinata HOM05D001394 ORTHO05D001237 1.7e-11 73.2 98 45.9
A05p30340 Brassica napus HOM05D001394 ORTHO05D001237 1.7e-11 73.2 98 45.9
C05p45910 Brassica napus HOM05D001394 ORTHO05D001237 1.7e-11 73.2 98 45.9
BolC5t33310H Brassica oleracea HOM05D001394 ORTHO05D001237 1.7e-11 73.2 98 45.9
BraA05t21872Z Brassica rapa HOM05D001394 ORTHO05D001237 1.7e-11 73.2 98 45.9
Haze_10082 Corylus avellana HOM05D001394 ORTHO05D001237 1.7e-11 73.2 122 42.6
Eucgr.G01439 Eucalyptus grandis HOM05D001394 ORTHO05D001237 1.7e-11 73.2 120 43.3
Prupe.8G125400 Prunus persica HOM05D001394 ORTHO05D001237 2.9e-11 72.4 100 51.0
AUR62038326 Chenopodium quinoa HOM05D001394 ORTHO05D001237 4.9e-11 71.6 107 44.9
Pp3c23_10940 Physcomitrium patens HOM05D001394 ORTHO05D001237 8.3e-11 70.9 100 46.0
SMO118G0419 Selaginella moellendorffii HOM05D001394 ORTHO05D001237 4.1e-10 68.6 98 43.9
CAN.G667.3 Capsicum annuum HOM05D001394 ORTHO05D001237 7.0e-10 67.8 94 45.7
ATR1102G047 Amborella trichopoda HOM05D001394 ORTHO05D001237 1.6e-09 66.6 103 40.8
Mapoly0119s0040 Marchantia polymorpha HOM05D001394 ORTHO05D001237 3.5e-09 65.5 99 45.5
Sc18g0004080 Simmondsia chinensis HOM05D001394 ORTHO05D001237 6.0e-09 64.7 38 84.2
Duzib052G0202 Durio zibethinus HOM05D001394 ORTHO05D001237 7.8e-09 64.3 35 88.6
TAR381G0303 Trochodendron aralioides HOM05D001394 ORTHO05D001237 6.6e-08 61.2 107 42.1
DCAR_026691 Daucus carota HOM05D001394 ORTHO05D001237 8.6e-08 60.8 101 42.6
A01p35340 Brassica napus HOM05D001394 ORTHO05D001237 1.5e-07 60.1 35 77.1
BraA01t03615Z Brassica rapa HOM05D001394 ORTHO05D001237 1.5e-07 60.1 35 77.1
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 1.9e-07 59.7 99 40.4
Eucgr.K00842 Eucalyptus grandis HOM05D001394 ORTHO05D001237 1.9e-07 59.7 97 41.2
THA.LOC104821980 Tarenaya hassleriana HOM05D001394 ORTHO05D001237 1.9e-07 59.7 102 40.2
Glyma.02G127000 Glycine max HOM05D001394 ORTHO05D001237 2.5e-07 59.3 107 36.4
Lj5A209G71 Lonicera japonica HOM05D001394 ORTHO05D001237 3.3e-07 58.9 37 78.4
MBI14_g16234_MAGBIO Magnolia biondii HOM05D001394 ORTHO05D001237 3.3e-07 58.9 104 44.2
Mapoly0154s0016 Marchantia polymorpha HOM05D001394 ORTHO05D001237 5.6e-07 58.2 98 39.8
Pp3c9_8810 Physcomitrium patens HOM05D001394 ORTHO05D001237 7.3e-07 57.8 101 34.7
Glyma.02G126800 Glycine max HOM05D001394 ORTHO05D001237 9.5e-07 57.4 107 35.5
SMO196G0284 Selaginella moellendorffii HOM05D001394 ORTHO05D001237 9.5e-07 57.4 102 34.3
Duzib251G0136 Durio zibethinus HOM05D001394 ORTHO05D001237 1.2e-06 57.0 100 39.0
Psat2g098520 Pisum sativum HOM05D001394 ORTHO05D001237 1.6e-06 56.6 103 38.8
HPP92_018197 Vanilla planifolia HOM05D001394 ORTHO05D001237 1.6e-06 56.6 38 71.1
MSTRG.7710 Avicennia marina HOM05D001394 ORTHO05D001237 2.1e-06 56.2 103 38.8
MELO3C005172.2 Cucumis melo HOM05D001394 ORTHO05D001237 2.1e-06 56.2 104 40.4
SEGI_40358 Sequoiadendron giganteum HOM05D001394 ORTHO05D001237 2.1e-06 56.2 110 31.8
Pp3c4_17010 Physcomitrium patens HOM05D001394 ORTHO05D001237 2.8e-06 55.8 100 37.0
SalBow8G4569 Salvia bowleyana HOM05D001394 ORTHO05D001237 2.8e-06 55.8 103 38.8
AUR62023915 Chenopodium quinoa HOM05D001394 ORTHO05D001237 3.6e-06 55.5 34 79.4
CsaV3_5G018870 Cucumis sativus L. HOM05D001394 ORTHO05D001237 3.6e-06 55.5 104 40.4
COL.COLO4_27748 Corchorus olitorius HOM05D001394 ORTHO05D001237 4.7e-06 55.1 103 35.0
SGA_v2.0_scaffold90G27656 Striga asiatica HOM05D001394 ORTHO05D001237 4.7e-06 55.1 53 50.9
AagrBONN_evm.TU.Sc2ySwM_368.2490 Anthoceros agrestis HOM05D001394 ORTHO05D001237 6.2e-06 54.7 105 38.1
TPR.G2673 Trifolium pratense HOM05D001394 ORTHO05D001237 6.2e-06 54.7 103 39.8
Zm00001eb253380 Zea mays HOM05D001394 ORTHO05D001237 6.2e-06 54.7 104 40.4
ClCG01G007400 Citrullus lanatus HOM05D001394 ORTHO05D001237 8.1e-06 54.3 101 40.6
Lsat_1_v5_gn_3_105401 Lactuca sativa HOM05D001394 ORTHO05D001237 8.1e-06 54.3 113 38.9
TPR.G2664 Trifolium pratense HOM05D001394 ORTHO05D001237 8.1e-06 54.3 103 38.8


User provided reference genes

Program Settings