Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030096 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 5.1e-128 461.1 230 100.0
CSS0001527 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 3.1e-125 451.8 230 98.3
CSS0017980 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 1.1e-74 283.9 155 92.3
CSS0043109 Camellia sinensis var. sinensis HOM05D031035 ORTHO05D013980 1.0e-72 277.3 155 91.0
vmacro18913 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 2.0e-55 219.9 229 55.9
Rhsim08G0221300 Rhododendron simsii HOM05D001537 ORTHO05D002595 3.4e-55 219.2 229 56.3
Actinidia08978 Actinidia chinensis HOM05D001537 ORTHO05D002595 2.2e-54 216.5 235 55.7
Dinv30509 Davidia involucrata HOM05D001537 ORTHO05D002595 2.3e-43 179.9 236 50.0
TAR636G3516 Trochodendron aralioides HOM05D001537 ORTHO05D002595 2.4e-24 116.7 249 37.8
Atru.chr1.3271 Acer truncatum HOM05D001537 ORTHO05D002595 3.1e-24 116.3 239 37.2
GSVIVG01017107001 Vitis vinifera HOM05D001537 ORTHO05D013980 3.1e-24 116.3 281 32.4
Potri.001G180200 Populus trichocarpa HOM05D001537 ORTHO05D002595 6.4e-22 108.6 235 34.9
Lj5A60G62 Lonicera japonica HOM05D001537 ORTHO05D013980 1.1e-21 107.8 235 33.6
CAN.G438.67 Capsicum annuum HOM05D001537 ORTHO05D002595 5.4e-21 105.5 222 36.5
Haze_16429 Corylus avellana HOM05D001537 ORTHO05D002595 7.1e-21 105.1 241 37.3
TWI12G1035 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 1.6e-20 104.0 237 35.0
MD17G1195000 Malus domestica HOM05D001537 ORTHO05D002595 3.0e-19 99.8 232 34.5
Cfa002066 Carpinus fangiana HOM05D001537 ORTHO05D002595 8.7e-19 98.2 237 36.7
Prupe.3G071000 Prunus persica HOM05D001537 ORTHO05D002595 1.5e-18 97.4 236 32.6
Hma1.2p1_0092F.1_g046630 Hydrangea macrophylla HOM05D001537 ORTHO05D013980 7.3e-18 95.1 149 45.6
QL05p024197 Quercus lobata HOM05D001537 ORTHO05D002595 3.6e-17 92.8 192 39.6
Manes.11G047500 Manihot esculenta HOM05D001537 ORTHO05D002595 4.8e-17 92.4 235 34.5
Nitab4.5_0000671g0080 Nicotiana tabacum HOM05D001537 ORTHO05D002595 3.1e-16 89.7 228 33.3
Ciclev10024801m.g Citrus clementina HOM05D001537 ORTHO05D002595 5.3e-16 89.0 204 40.2
RcHm_v2.0_Chr2g0137871 Rosa chinensis HOM05D001537 ORTHO05D002595 1.2e-15 87.8 240 33.8
CiPaw.01G239300 Carya illinoinensis HOM05D001537 ORTHO05D002595 1.5e-15 87.4 238 34.9
Solyc03g120200.2 Solanum lycopersicum HOM05D001537 ORTHO05D002595 1.5e-15 87.4 221 31.2
Sopen03g039070 Solanum pennellii HOM05D001537 ORTHO05D002595 7.6e-15 85.1 221 31.2
MSTRG.11077 Avicennia marina HOM05D001537 ORTHO05D002595 1.4e-13 80.9 234 31.6
Duzib235G1517 Durio zibethinus HOM05D001537 ORTHO05D002595 3.2e-13 79.7 234 33.3
Cc04_g03430 Coffea canephora HOM05D001537 ORTHO05D002595 1.2e-12 77.8 225 31.6
TPR.G37206 Trifolium pratense HOM05D001537 ORTHO05D002595 1.6e-12 77.4 231 28.6
Nn8g39217 Nelumbo nucifera HOM05D001537 ORTHO05D002595 2.7e-12 76.6 236 33.1
Ca_01115_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 3.5e-12 76.3 231 31.2
Psat5g298960 Pisum sativum HOM05D001537 ORTHO05D002595 3.5e-12 76.3 231 29.4
COL.COLO4_30371 Corchorus olitorius HOM05D001537 ORTHO05D002595 7.9e-12 75.1 233 32.2
Thecc.06G087400 Theobroma cacao HOM05D001537 ORTHO05D002595 8.7e-11 71.6 237 30.8
Sed0016827 Sechium edule HOM05D001537 ORTHO05D002595 1.5e-10 70.9 241 29.5
Medtr2g102150 Medicago truncatula HOM05D001537 ORTHO05D002595 3.3e-10 69.7 231 27.3
Eucgr.F03013 Eucalyptus grandis HOM05D001537 ORTHO05D002595 5.6e-10 68.9 215 31.6
Migut.I00865 Erythranthe guttata HOM05D001537 ORTHO05D002595 1.6e-09 67.4 217 30.0
arahy.Tifrunner.gnm1.ann1.I8FNU5 Arachis hypogaea HOM05D001537 ORTHO05D002595 8.1e-09 65.1 225 29.3
arahy.Tifrunner.gnm1.ann1.YVS4XZ Arachis hypogaea HOM05D001537 ORTHO05D002595 8.1e-09 65.1 225 29.3
VMungo1080G0222 Vigna mungo HOM05D001537 ORTHO05D002595 8.1e-09 65.1 220 28.2
FAN14G4499 Fragaria x ananassa HOM05D001537 ORTHO05D002595 1.4e-08 64.3 251 29.5
QL05p023971 Quercus lobata HOM05D000071 ORTHO05D000029 1.8e-08 63.9 237 27.0
TPR.G37208 Trifolium pratense HOM05D001537 ORTHO05D002595 2.4e-08 63.5 232 27.6
PGR102G0923 Punica granatum HOM05D001537 ORTHO05D002595 4.0e-08 62.8 219 28.3
FvH4_6g31180 Fragaria vesca HOM05D001537 ORTHO05D002595 5.3e-08 62.4 251 29.1
Phvul.005G171300 Phaseolus vulgaris HOM05D001537 ORTHO05D002595 5.3e-08 62.4 230 28.3
Sc21g0005110 Simmondsia chinensis HOM05D001537 ORTHO05D002595 6.9e-08 62.0 234 28.6
Lalb_Chr22g0351281 Lupinus albus HOM05D001537 ORTHO05D002595 1.5e-07 60.8 130 34.6
DCAR_016222 Daucus carota HOM05D001537 ORTHO05D002595 3.4e-07 59.7 224 28.6
FAN05G3427 Fragaria x ananassa HOM05D001537 ORTHO05D002595 7.6e-07 58.5 251 29.1
Peaxi162Scf00015g00339 Petunia axillaris HOM05D001537 ORTHO05D002595 1.7e-06 57.4 227 26.9


User provided reference genes

Program Settings