Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-272 942.6 466 100.0
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-200 701.8 474 78.9
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-184 649.0 492 71.5
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.4e-146 521.2 334 80.8
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.0e-131 473.4 550 49.1
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.5e-123 445.7 493 51.7
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.2e-121 439.5 493 51.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.3e-111 406.8 494 47.4
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.6e-110 403.3 488 49.0
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.2e-104 384.4 490 47.8
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.3e-95 353.6 489 44.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 7.5e-94 348.6 476 45.0
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 8.3e-93 345.1 489 42.7
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.2e-91 341.3 490 43.5
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.7e-91 340.1 490 43.9
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.2e-90 337.0 489 42.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.9e-89 334.0 490 42.4
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 6.1e-88 328.9 488 42.8
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.0e-87 326.6 492 42.1
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 9.8e-86 321.6 486 40.1
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.4e-84 317.0 485 40.0
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 4.1e-84 316.2 492 40.7
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 5.9e-83 312.4 487 39.2
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.8e-80 303.5 494 39.9
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 6.1e-80 302.4 468 40.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.8e-79 300.8 489 38.2
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 4.0e-79 299.7 485 37.9
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.2e-78 298.1 488 39.1
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 5.7e-78 295.8 495 39.4
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.2e-75 288.1 534 36.3
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.2e-75 288.1 485 36.9
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.7e-74 284.3 338 47.0
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 2.3e-74 283.9 494 38.9
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.0e-74 283.5 483 38.7
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.9e-73 280.8 489 38.4
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.9e-73 280.8 494 38.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 7.3e-73 278.9 484 36.4
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.2e-72 278.1 486 36.6
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.6e-72 277.7 484 36.4
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.6e-72 277.7 490 35.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.1e-72 277.3 487 37.6
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.1e-72 277.3 487 38.2
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.8e-72 276.9 494 38.3
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.8e-72 276.9 488 37.3
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 6.2e-72 275.8 488 37.5
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.0e-71 275.0 488 37.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 4.0e-71 273.1 338 46.4
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 4.0e-71 273.1 495 39.6
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.2e-70 271.6 492 37.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.5e-70 271.2 481 38.0
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.6e-70 270.4 492 38.2
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 3.4e-70 270.0 490 38.4
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 7.5e-70 268.9 496 38.5
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 9.8e-70 268.5 490 37.6
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 9.8e-70 268.5 483 36.0
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.7e-69 267.7 485 36.9
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.7e-69 267.7 488 36.7
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.9e-69 266.9 488 36.7
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 8.3e-69 265.4 494 37.2
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 7.0e-68 262.3 488 36.5
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.2e-67 261.5 446 38.1
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.2e-67 261.5 488 35.5
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.7e-67 260.4 491 35.8
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 2.3e-66 257.3 488 35.9
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.3e-66 257.3 495 37.6
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.1e-64 250.8 483 36.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 3.6e-64 250.0 488 35.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 6.2e-64 249.2 491 35.2
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.8e-63 247.7 490 33.7
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.3e-63 247.3 499 34.9
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.1e-63 246.9 492 37.2
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 5.2e-63 246.1 489 35.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 3.4e-62 243.4 480 35.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 7.5e-62 242.3 488 34.2
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.3e-61 241.5 525 32.8
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.9e-61 239.6 480 36.2
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 8.3e-61 238.8 494 36.8
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.7e-59 233.8 477 34.8
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.3e-58 231.5 489 35.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.5e-57 228.0 485 35.3
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.9e-57 227.6 484 35.3
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 2.5e-57 227.3 489 33.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.5e-57 227.3 488 33.2
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.2e-56 224.9 476 34.9
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.2e-56 224.9 488 32.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.6e-56 224.6 497 36.0
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.1e-56 224.2 472 34.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 3.6e-56 223.4 488 32.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 6.2e-56 222.6 475 32.0
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.3e-55 220.7 476 34.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 4.0e-55 219.9 474 35.7
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 3.4e-54 216.9 441 33.3
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 4.4e-54 216.5 478 35.1
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 7.6e-54 215.7 472 34.5
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 7.6e-54 215.7 488 33.6
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 9.9e-54 215.3 474 35.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 9.9e-54 215.3 473 34.7
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.3e-53 214.9 333 39.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.9e-53 213.8 478 35.1
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 4.9e-53 213.0 474 35.0
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 6.4e-53 212.6 483 31.1
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.1e-52 211.8 478 34.1
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.1e-52 211.8 472 34.7
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.1e-52 211.8 473 30.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 4.1e-52 209.9 478 34.9
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 5.4e-52 209.5 479 34.7
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-50 204.9 472 32.6
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.7e-50 204.5 474 34.0
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.9e-49 201.1 472 32.8
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 7.3e-49 199.1 482 31.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.7e-48 196.4 480 31.7
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.4e-47 194.9 474 33.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 6.8e-47 192.6 489 30.7
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.6e-46 190.7 484 31.8
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.9e-45 186.4 498 32.9
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.4e-44 184.1 290 39.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 3.0e-42 177.2 474 30.8
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 5.1e-42 176.4 420 31.4
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.5e-41 174.9 480 31.2
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.6e-38 164.1 487 29.2
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 9.6e-33 145.6 319 35.1
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.6e-33 145.6 484 28.1
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.9e-29 134.0 104 68.3
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.6e-27 128.3 125 57.6
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.7e-24 117.1 334 30.8
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.1e-23 115.5 140 48.6
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 6.9e-23 112.8 245 33.1
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.8e-22 109.8 88 59.1
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.8e-22 109.8 88 59.1
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.4e-20 105.1 405 25.7
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 4.2e-20 103.6 229 31.4
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 3.9e-18 97.1 128 42.2
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.9e-18 97.1 351 24.5
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 6.7e-18 96.3 127 41.7
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 4.3e-17 93.6 146 37.7
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 4.3e-17 93.6 102 47.1
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.3e-17 93.6 237 30.4
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 5.7e-17 93.2 73 60.3
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.4e-15 88.6 162 36.4
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 4.5e-14 83.6 221 31.2
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.0e-13 82.4 60 70.0
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.0e-13 82.4 145 35.9
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 2.2e-13 81.3 500 23.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.9e-13 80.9 98 46.9
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.1e-11 74.7 111 38.7
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 3.0e-10 70.9 100 39.0
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.1e-09 68.9 87 39.1
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.5e-09 68.6 69 58.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.1e-07 62.4 75 49.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 3.1e-07 60.8 114 37.7
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 4.1e-07 60.5 142 27.5
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 3.4e-06 57.4 51 58.8
Lalb_Chr04g0252791 Lupinus albus HOM05D003682 ORTHO05D004224 7.7e-06 56.2 81 35.8


User provided reference genes

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