Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.5e-89 332.8 164 100.0
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.3e-88 329.7 163 98.8
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 6.1e-67 257.7 158 76.6
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.0e-66 256.9 152 82.2
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.8e-66 256.1 150 80.7
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 4.4e-65 251.5 164 74.4
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 1.3e-64 250.0 154 78.6
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 5.9e-62 241.1 161 70.2
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 7.7e-62 240.7 162 72.2
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 1.0e-61 240.4 157 76.4
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.0e-61 240.4 162 70.4
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 2.9e-61 238.8 159 73.6
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 3.8e-61 238.4 162 71.6
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 8.5e-61 237.3 156 71.2
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 8.5e-61 237.3 158 72.8
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.5e-60 236.5 158 72.2
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.9e-60 236.1 164 70.7
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 2.5e-60 235.7 161 69.6
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 2.5e-60 235.7 158 71.5
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 9.4e-60 233.8 162 74.1
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.2e-59 233.4 162 71.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.1e-59 232.6 161 72.0
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 3.6e-59 231.9 159 69.8
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 3.6e-59 231.9 153 70.6
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 8.0e-59 230.7 164 68.9
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.0e-58 230.3 156 71.2
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 3.0e-58 228.8 159 69.8
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 3.0e-58 228.8 154 70.8
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 4.0e-58 228.4 154 70.8
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 5.2e-58 228.0 153 71.2
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 8.8e-58 227.3 159 67.9
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 2.0e-57 226.1 162 69.1
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 5.7e-57 224.6 155 69.7
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 7.5e-57 224.2 164 67.1
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 9.8e-57 223.8 155 71.0
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.7e-56 221.9 160 70.6
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 6.3e-56 221.1 163 66.9
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 5.4e-55 218.0 155 66.5
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 7.0e-55 217.6 159 67.3
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 1.2e-54 216.9 156 69.9
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 1.2e-54 216.9 154 73.4
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 2.7e-54 215.7 162 67.9
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.7e-53 213.0 162 66.0
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.7e-53 213.0 150 68.0
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 2.9e-53 212.2 153 64.7
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 5.0e-53 211.5 157 63.1
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 2.5e-52 209.1 157 62.4
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.5e-52 209.1 164 64.6
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 5.5e-52 208.0 161 65.2
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 2.1e-51 206.1 161 65.2
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 2.1e-51 206.1 168 58.9
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 4.7e-51 204.9 157 61.8
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 6.1e-51 204.5 157 61.1
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.0e-50 203.8 159 62.3
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 1.0e-50 203.8 156 64.1
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 2.3e-50 202.6 157 60.5
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.0e-50 201.8 149 66.4
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.2e-50 201.4 148 66.9
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 5.2e-50 201.4 167 58.7
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 8.9e-50 200.7 156 63.5
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.5e-49 199.9 148 65.5
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 2.0e-49 199.5 159 62.3
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 2.6e-49 199.1 153 60.1
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 1.3e-48 196.8 162 59.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.7e-48 196.4 146 66.4
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 2.2e-48 196.1 153 58.8
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 2.8e-48 195.7 143 66.4
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 4.9e-48 194.9 159 60.4
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 5.9e-46 188.0 152 61.2
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 2.3e-45 186.0 156 59.0
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 1.9e-44 183.0 159 57.9
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 2.5e-44 182.6 152 60.5
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 2.5e-44 182.6 123 66.7
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 2.5e-44 182.6 146 61.6
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 7.3e-44 181.0 160 55.0
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 7.3e-44 181.0 152 58.6
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 2.8e-43 179.1 153 54.2
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 6.1e-43 177.9 153 54.2
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 8.9e-42 174.1 153 55.6
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 2.6e-41 172.6 160 55.0
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 4.4e-41 171.8 154 53.2
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.2e-40 169.5 155 53.5
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.9e-40 169.1 161 52.2
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 3.7e-40 168.7 156 51.9
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 6.4e-40 167.9 155 50.3
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.8e-39 166.4 164 48.2
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 2.4e-39 166.0 155 52.3
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 7.0e-39 164.5 155 51.6
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 9.2e-39 164.1 152 50.7
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 9.2e-39 164.1 152 50.7
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.2e-38 163.7 154 57.1
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 2.7e-38 162.5 122 67.2
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 4.6e-38 161.8 152 50.7
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 4.6e-38 161.8 152 50.7
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 3.0e-37 159.1 151 55.6
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 2.5e-36 156.0 159 47.8
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 3.3e-36 155.6 152 48.7
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 9.5e-36 154.1 158 48.7
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 1.6e-35 153.3 155 46.5
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.1e-35 152.9 153 51.0
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 8.0e-35 151.0 164 50.6
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 4.0e-34 148.7 165 44.2
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.2e-34 148.3 148 50.7
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 2.0e-33 146.4 164 50.0
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 5.8e-33 144.8 118 61.9
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 2.7e-30 136.0 166 48.2
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 1.3e-29 133.7 156 39.7
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 5.6e-28 128.3 157 40.1
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 8.9e-26 120.9 150 44.7
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 2.2e-24 116.3 149 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 4.1e-23 112.1 149 38.3
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 6.0e-22 108.2 66 77.3
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 4.3e-12 75.5 60 66.7
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 1.8e-10 70.1 133 33.8
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 2.4e-10 69.7 110 31.8
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 1.3e-08 63.9 111 40.5
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 8.4e-08 61.2 143 35.0
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 3.2e-07 59.3 168 28.6


User provided reference genes

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