Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-35 151.8 73 100.0
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.0e-34 147.5 73 97.3
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.8e-34 146.7 72 97.2
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.8e-34 146.4 72 97.2
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.8e-34 146.4 72 97.2
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-32 142.5 73 94.5
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.4e-23 110.5 56 94.6
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.3e-20 101.3 66 74.2
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.2e-20 100.9 66 74.2
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.2e-20 100.9 66 74.2
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.2e-18 94.0 65 72.3
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.2e-17 92.8 58 72.4
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.6e-17 91.7 65 72.3
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.6e-17 91.7 65 69.2
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 7.5e-17 90.1 65 70.8
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 7.5e-17 90.1 58 75.9
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.5e-17 90.1 65 69.2
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.8e-17 89.7 61 72.1
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.3e-16 89.4 51 84.3
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.7e-16 89.0 65 69.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.2e-16 88.6 65 69.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 2.8e-16 88.2 65 64.6
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.7e-16 87.8 58 72.4
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.7e-16 87.8 61 70.5
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.9e-16 87.4 58 74.1
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 6.3e-16 87.0 65 67.7
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 8.3e-16 86.7 65 67.7
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-15 86.3 65 67.7
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-15 85.9 60 70.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.4e-15 85.9 66 66.7
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.4e-15 85.1 61 70.5
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.4e-15 85.1 65 66.2
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.4e-15 85.1 56 76.8
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.2e-15 84.7 60 68.3
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.2e-15 84.7 62 71.0
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 3.2e-15 84.7 65 64.6
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.1e-15 84.3 61 68.9
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.1e-15 84.3 61 68.9
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.1e-15 84.3 63 66.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.1e-15 84.3 58 69.0
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 5.4e-15 84.0 65 66.2
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 7.0e-15 83.6 65 64.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 9.2e-15 83.2 65 66.2
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 9.2e-15 83.2 65 63.1
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 9.2e-15 83.2 65 63.1
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.2e-14 82.8 58 70.7
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.2e-14 82.8 65 64.6
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.0e-14 82.0 65 64.6
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.0e-14 82.0 65 63.1
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.7e-14 81.6 57 68.4
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.7e-14 81.6 65 64.6
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.7e-14 81.6 65 58.5
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.7e-14 81.6 65 58.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 3.5e-14 81.3 56 75.0
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.6e-14 80.9 58 65.5
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 4.6e-14 80.9 58 67.2
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 4.6e-14 80.9 58 62.1
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 5.9e-14 80.5 58 67.2
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 5.9e-14 80.5 58 67.2
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 7.8e-14 80.1 58 62.1
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.0e-13 79.7 57 66.7
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.0e-13 79.7 55 72.7
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.0e-13 79.7 61 63.9
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.3e-13 79.3 58 62.1
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.3e-13 79.3 58 67.2
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.7e-13 79.0 58 63.8
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.7e-13 79.0 61 62.3
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.7e-13 79.0 63 58.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 2.3e-13 78.6 63 63.5
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.3e-13 78.6 65 58.5
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.9e-13 78.2 61 62.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.9e-13 78.2 65 61.5
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 6.6e-13 77.0 57 64.9
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.1e-12 76.3 58 67.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.1e-12 76.3 58 65.5
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.5e-12 75.9 58 65.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.5e-12 75.9 54 66.7
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.5e-12 75.9 57 61.4
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.5e-12 75.9 58 63.8
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.5e-12 75.9 58 60.3
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.5e-12 75.9 65 60.0
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.9e-12 75.5 65 61.5
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.9e-12 75.5 65 58.5
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.5e-12 75.1 61 65.6
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.3e-12 74.7 65 63.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.3e-12 74.7 56 64.3
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 4.3e-12 74.3 61 65.6
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 4.3e-12 74.3 65 63.1
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 4.3e-12 74.3 59 61.0
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 5.6e-12 73.9 65 61.5
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 7.3e-12 73.6 61 60.7
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 7.3e-12 73.6 61 63.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 7.3e-12 73.6 58 60.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 9.5e-12 73.2 58 65.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 9.5e-12 73.2 61 63.9
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-11 72.8 60 66.7
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.2e-11 72.8 65 58.5
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.6e-11 72.4 65 61.5
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.1e-11 72.0 65 61.5
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.8e-11 71.6 65 60.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.8e-11 71.6 61 63.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 4.7e-11 70.9 58 67.2
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.4e-10 69.3 65 56.9
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.8e-10 68.9 61 54.1
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.3e-10 68.6 58 62.1
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 4.0e-10 67.8 61 60.7
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 4.0e-10 67.8 59 61.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 5.2e-10 67.4 47 72.3
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 8.9e-10 66.6 49 65.3
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.2e-09 66.2 65 56.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-09 66.2 49 67.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-09 65.9 43 74.4
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 2.0e-09 65.5 65 53.8
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 3.4e-09 64.7 49 61.2
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.4e-09 64.7 40 77.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 3.4e-09 64.7 40 77.5
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 5.8e-09 63.9 52 59.6
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 9.8e-09 63.2 40 75.0
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 9.8e-09 63.2 52 55.8
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 3.7e-08 61.2 47 59.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.2e-07 56.6 44 65.9
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.0e-06 55.5 46 63.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.7e-06 55.1 51 60.8
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.0e-06 53.9 37 70.3
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.8e-06 53.5 56 48.2
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.8e-06 53.5 56 48.2


User provided reference genes

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