Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1335.5 653 100.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 6.5e-237 824.3 745 61.3
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 3.2e-236 822.0 742 61.5
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 8.0e-235 817.4 745 60.5
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 3.6e-227 792.0 745 59.1
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 9.7e-225 783.9 759 57.4
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 7.0e-223 777.7 734 59.3
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 2.9e-221 772.3 747 57.4
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 8.8e-218 760.8 749 57.0
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 1.2e-217 760.4 750 56.9
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 1.2e-217 760.4 744 57.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 7.5e-217 757.7 733 57.7
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 1.3e-216 756.9 744 56.6
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 9.1e-215 750.7 744 57.3
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 2.0e-214 749.6 742 57.3
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 5.0e-213 745.0 739 55.6
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 2.5e-212 742.7 742 55.5
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 3.3e-212 742.3 748 55.7
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 7.2e-212 741.1 756 55.4
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.2e-211 740.3 732 56.8
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 2.8e-211 739.2 747 56.1
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 3.6e-211 738.8 740 56.1
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 1.0e-210 737.3 743 56.5
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.8e-210 736.5 756 55.4
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 4.0e-210 735.3 742 55.4
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 5.2e-210 734.9 756 55.3
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.8e-210 734.6 756 55.8
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.2e-208 729.6 733 56.1
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 2.8e-208 729.2 742 55.1
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 4.9e-208 728.4 740 55.4
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 6.3e-208 728.0 742 55.1
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 1.1e-207 727.2 740 55.3
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 1.4e-207 726.9 729 56.0
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 1.4e-207 726.9 741 54.9
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 2.4e-207 726.1 742 54.6
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 4.1e-207 725.3 742 54.6
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 4.1e-207 725.3 736 55.4
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 3.5e-206 722.2 748 55.2
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 3.5e-206 722.2 741 54.7
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 1.3e-205 720.3 737 55.2
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 3.8e-205 718.8 736 55.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 5.0e-205 718.4 740 54.3
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 6.6e-205 718.0 742 54.7
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.1e-204 717.2 748 53.5
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.9e-204 716.5 742 54.0
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 4.3e-204 715.3 739 54.8
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 5.6e-204 714.9 744 54.0
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 1.6e-203 713.4 671 58.6
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 4.7e-203 711.8 749 54.6
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 6.1e-203 711.4 737 55.0
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.3e-202 709.5 734 55.2
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 4.0e-202 708.8 727 55.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 5.2e-202 708.4 746 54.0
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 5.8e-201 704.9 748 54.1
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 2.2e-200 703.0 744 53.8
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 2.9e-200 702.6 738 55.0
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 3.7e-200 702.2 746 54.0
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.4e-199 699.5 772 53.1
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 2.4e-199 699.5 738 54.1
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 7.0e-199 698.0 737 54.4
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 9.2e-199 697.6 778 51.7
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 3.5e-198 695.7 747 54.1
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 4.6e-198 695.3 737 54.1
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 5.0e-197 691.8 744 52.8
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 6.6e-197 691.4 833 50.4
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 4.3e-196 688.7 741 53.3
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 1.8e-194 683.3 731 53.9
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 5.2e-194 681.8 673 56.6
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 4.6e-190 668.7 740 52.0
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 7.8e-190 667.9 744 51.7
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.5e-188 662.9 710 54.5
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 5.8e-185 651.7 791 48.5
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 9.9e-185 651.0 727 51.4
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 2.2e-184 649.8 728 51.6
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 8.3e-184 647.9 727 51.2
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.2e-183 646.0 723 51.2
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 7.1e-183 644.8 725 51.3
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 2.7e-182 642.9 728 51.2
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 4.6e-182 642.1 737 49.9
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 7.8e-182 641.3 722 50.4
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.0e-181 641.0 731 50.3
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.7e-181 640.2 738 49.7
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 7.3e-180 634.8 736 49.2
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.2e-179 634.0 739 50.7
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.1e-178 629.4 729 50.1
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 5.8e-177 625.2 747 49.1
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 1.7e-176 623.6 730 50.4
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 2.2e-176 623.2 729 49.4
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 3.2e-175 619.4 744 48.9
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 5.4e-175 618.6 784 47.4
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 2.6e-169 599.7 592 56.2
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 2.2e-168 596.7 707 50.2
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 5.6e-164 582.0 589 56.5
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.8e-163 579.7 752 47.3
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.2e-161 574.3 746 47.1
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.5e-161 573.9 632 53.0
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.8e-157 560.5 529 58.6
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 2.0e-153 547.0 706 46.0
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 2.0e-153 547.0 513 57.9
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 1.7e-136 490.7 724 41.6
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 2.5e-132 476.9 720 40.6
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 9.4e-119 431.8 332 68.7
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 6.3e-115 419.1 722 36.8
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 4.7e-110 402.9 886 33.4
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 6.5e-104 382.5 427 51.8
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 2.3e-101 374.0 852 32.9
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 4.4e-92 343.2 332 54.5
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.3e-88 330.9 303 60.1
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.1e-87 328.6 330 53.3
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 4.3e-87 326.6 774 32.3
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.2e-86 325.1 748 31.8
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 8.1e-78 295.8 523 39.0
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.3e-77 294.3 769 31.6
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.3e-72 278.5 359 45.1
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.5e-71 275.0 709 29.8
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 2.1e-70 271.2 270 52.2
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 4.4e-68 263.5 385 44.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 1.1e-61 242.3 192 63.0
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 9.3e-42 176.0 217 47.0
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 4.0e-37 160.6 113 68.1
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.5e-34 151.4 137 59.9
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.2e-28 132.5 157 48.4
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.3e-22 112.5 139 44.6
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 2.8e-22 111.3 108 57.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 3.7e-22 110.9 112 58.9
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 6.5e-19 100.1 61 73.8
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 2.5e-18 98.2 148 43.2
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 4.3e-15 87.4 62 64.5
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.3e-13 80.5 59 66.1
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 2.2e-11 75.1 62 61.3
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 3.8e-11 74.3 72 51.4
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 9.4e-10 69.7 43 72.1
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 3.7e-06 57.8 40 65.0


User provided reference genes

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